Hey, I got a quick question about the e-value cutoff for collinear genes.
For example, here is a list of syntenic blocks. All the genes have very low e-value from blast. How do you calculate the score and e-value from for the syntenic blocks?
Best,
Li
Alignment 2: score=150.0 e_value=0.057 N=3 HZ1&JO11 minus
Hey, I got a quick question about the e-value cutoff for collinear genes.
For example, here is a list of syntenic blocks. All the genes have very low e-value from blast. How do you calculate the score and e-value from for the syntenic blocks?
Best, Li
Alignment 2: score=150.0 e_value=0.057 N=3 HZ1&JO11 minus
2- 0: HZgenemark-gi|1002316191|dbj|BCGQ01000010.1|-processed-gene-1.107 JOYER156C 3e-111 2- 1: HZsnap_masked-gi|1002316191|dbj|BCGQ01000010.1|-processed-gene-1.62 JOYER155C 4e-172 2- 2: HZgenemark-gi|1002316191|dbj|BCGQ01000010.1|-processed-gene-1.130 JOYER154W 1e-47