During installation I have encountered with this warning, will it cause any problem while running the tool. Because I am not getting anything in the result when I am giving my own input but if run for the example file it is showing the results. is any thing wrong with my input files. Below I have added the input files that I have used.
g++ struct.cc mcscan.cc read_data.cc out_utils.cc dagchainer.cc msa.cc permutation.cc -o MCScanX
mcscan.cc: In function ‘int main(int, char)’:
mcscan.cc:139:26: warning: ‘.collinearity’ directive writing 13 bytes into a region of size between 1 and 200 [-Wformat-overflow=]
139 | sprintf(align_fn, "%s.collinearity", prefix_fn);
| ^~~~~
mcscan.cc:139:12: note: ‘sprintf’ output between 14 and 213 bytes into a destination of size 200
139 | sprintf(align_fn, "%s.collinearity", prefix_fn);
| ~^~~~~~~~~~
g++ struct.cc mcscan_h.cc read_homology.cc out_homology.cc dagchainer.cc msa.cc permutation.cc -o MCScanX_h
mcscan_h.cc: In function ‘int main(int, char)’:
mcscan_h.cc:156:26: warning: ‘.collinearity’ directive writing 13 bytes into a region of size between 1 and 200 [-Wformat-overflow=]
156 | sprintf(align_fn, "%s.collinearity", prefix_fn);
| ^~~~~
mcscan_h.cc:156:12: note: ‘sprintf’ output between 14 and 213 bytes into a destination of size 200
156 | sprintf(align_fn, "%s.collinearity", prefix_fn);
| ~^~~~~~~~~~
g++ struct.cc dup_classifier.cc read_data.cc out_utils.cc dagchainer.cc cls.cc permutation.cc -o duplicate_gene_classifier
g++ dissect_multiple_alignment.cc -o downstream_analyses/dissect_multiple_alignment
g++ detect_collinear_tandem_arrays.cc -o downstream_analyses/detect_collinear_tandem_arrays
IN results of my input data us showing;
Reading BLAST file and pre-processing
Generating BLAST list
0 matches imported (7688 discarded)
0 pairwise comparisons
0 alignments generated
Pairwise collinear blocks written to /home/blast/GAR/gar.collinearity [0.038 seconds elapsed]
Writing multiple syntenic blocks to HTML files
Done! [0.000 seconds elapsed]
During installation I have encountered with this warning, will it cause any problem while running the tool. Because I am not getting anything in the result when I am giving my own input but if run for the example file it is showing the results. is any thing wrong with my input files. Below I have added the input files that I have used.
g++ struct.cc mcscan.cc read_data.cc out_utils.cc dagchainer.cc msa.cc permutation.cc -o MCScanX mcscan.cc: In function ‘int main(int, char)’: mcscan.cc:139:26: warning: ‘.collinearity’ directive writing 13 bytes into a region of size between 1 and 200 [-Wformat-overflow=] 139 | sprintf(align_fn, "%s.collinearity", prefix_fn); | ^
~~~~ mcscan.cc:139:12: note: ‘sprintf’ output between 14 and 213 bytes into a destination of size 200 139 | sprintf(align_fn, "%s.collinearity", prefix_fn); |~^~~~~~~~~~ g++ struct.cc mcscan_h.cc read_homology.cc out_homology.cc dagchainer.cc msa.cc permutation.cc -o MCScanX_h mcscan_h.cc: In function ‘int main(int, char)’: mcscan_h.cc:156:26: warning: ‘.collinearity’ directive writing 13 bytes into a region of size between 1 and 200 [-Wformat-overflow=] 156 | sprintf(align_fn, "%s.collinearity", prefix_fn); | ^~~~~ mcscan_h.cc:156:12: note: ‘sprintf’ output between 14 and 213 bytes into a destination of size 200 156 | sprintf(align_fn, "%s.collinearity", prefix_fn); |~^~~~~~~~~~ g++ struct.cc dup_classifier.cc read_data.cc out_utils.cc dagchainer.cc cls.cc permutation.cc -o duplicate_gene_classifier g++ dissect_multiple_alignment.cc -o downstream_analyses/dissect_multiple_alignment g++ detect_collinear_tandem_arrays.cc -o downstream_analyses/detect_collinear_tandem_arraysIN results of my input data us showing; Reading BLAST file and pre-processing Generating BLAST list 0 matches imported (7688 discarded) 0 pairwise comparisons 0 alignments generated Pairwise collinear blocks written to /home/blast/GAR/gar.collinearity [0.038 seconds elapsed] Writing multiple syntenic blocks to HTML files Done! [0.000 seconds elapsed]
Thank you in advance. inputfiles.tar.gz