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[MaxQuant converter] empty "evidence ids" for certain peptide in peptides.txt #2

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago 
File: 
https://code.google.com/p/mzq-lib/source/browse/trunk/src/main/resources/Pipelin
esOutcomePuf3/MaxQuant/peptides.txt

Peptide sequence: AFILGDLANATSNFHLLIDHELGTVDGDTILQLNDSTYMK

There is no value in evidence ids column as such there is no link from peptide 
to feature level. 

When reading this file, the code should take account to such rare occasion. The 
output mzq cannot produce any features linking back to the peptide.

Original issue reported on code.google.com by ukq...@gmail.com on 29 Oct 2014 at 12:13