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wzthu / Rbowtie2

Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval
https://www.bioconductor.org/packages/release/bioc/html/Rbowtie2.html
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Do not use simde as a Git submodule #10

Closed martin-g closed 1 year ago

martin-g commented 1 year ago

Copy its sources to src/bowtie2-VER/third_party/simde

Related-to: #8

Copied the current master (https://github.com/simd-everywhere/simde-no-tests/commit/3d87469f6f7ba1e6ef0fdc4116b9f5d1e73bc805)

martin-g commented 1 year ago

The build on Linux ARM64 passes:

~/bbs-3.17-bioc/R/bin/R CMD build Rbowtie2
* checking for file ‘Rbowtie2/DESCRIPTION’ ... OK
* preparing ‘Rbowtie2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘Rbowtie2_2.5.1.tar.gz’

// CC @hpages