x-atlas-consortia / hra-pop

HRApop
MIT License
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Total number of cells in ```spatial-and-bulk-datasets-breakdown.csv``` is too low #44

Closed andreasbueckle closed 5 months ago

andreasbueckle commented 8 months ago

Currently equals 275,139 with non-atlas datasets...issues with the query? Link: https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.5.1/reports/atlas/spatial-and-bulk-datasets-breakdown.csv

EDIT 1/29/24 with @bherr2 : Note that the way the cells are counted affect the number of cells reported. In https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.5.1/reports/atlas/consortium-breakdown.csv, for example, cells are counted multiple times, depending on how many cell type annotation tools a dataset was run though.