Open andreasbueckle opened 6 months ago
Make query to output long table where each row is a cell type and a biomarker. UMAP: each dot will be a cell type. dataset_id | cell_label | cell_id | organ | tool | b_label | b_mean_expression
dataset_id | cell_label | cell_id | organ | tool | b_label | b_mean_expression
Link to existing query: https://github.com/hubmapconsortium/ccf-grlc/blob/main/hra-pop/datasets-with-ct.rq
Query: https://github.com/x-atlas-consortia/hra-pop/blob/main/queries/atlas-ad-hoc/datasets-ct-bm-data.rq Report: https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.9.1/reports/atlas-ad-hoc/datasets-ct-bm-data.csv
bherr2
commented
6 months ago
Make query to output long table where each row is a cell type and a biomarker. UMAP: each dot will be a cell type.
dataset_id | cell_label | cell_id | organ | tool | b_label | b_mean_expressionLink to existing query: https://github.com/hubmapconsortium/ccf-grlc/blob/main/hra-pop/datasets-with-ct.rq