search

x-atlas-consortia / hra-pop

HRApop
MIT License
0 stars 1 forks source link

2 atlas SenNet datasets do not show values in `cell_type_annotation_tool` #91

Open andreasbueckle opened 3 weeks ago

andreasbueckle commented 3 weeks ago

The SenNet datasets in rows 15,169 and 13,319 in https://github.com/x-atlas-consortia/hra-pop/blob/main/output-data/v0.10.2/reports/universe-ad-hoc/sankey.csv are marked as is_atlas_dataset == true but have no value in cell_type_annotation_tool

Should be celltypist and popv

Query is at https://github.com/x-atlas-consortia/hra-pop/blob/main/queries/universe-ad-hoc/sankey.rq

andreasbueckle commented 3 weeks ago

Added manual fix in https://github.com/cns-iu/hra-cell-type-populations-supporting-information/pull/194/commits/4ce72a4f2eac4ae6bd38eed1659b3f76048996d3#diff-8ac1bc266c1f3ff62cf75beaa5558f9a01436fb573b4c49c9f4092ba1156271a

andreasbueckle commented 3 weeks ago

Update: They are present in as-cell-summaries.