A framework that combines data from the UMLS with assertions from other data sources into a set of CSV files that can be imported into neo4j to build a Unified Biomedical Knowledge Graph (UBKG)
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CEDAR edge files should associate fields with dataset types #125
The edge files from the CEDAR ETL do not currently describe relationships between CEDAR fields and dataset types. This relationship is available in the CEDAR template schema, as shown below.
Once the CEDAR edge and node files contain the necessary edges between fields and dataset types, the field-assays endpoint in hs-ontology-api can be enhanced to include assay associations for CEDAR fields that are not already in the field-assays.yaml.
Statement of problem
The edge files from the CEDAR ETL do not currently describe relationships between CEDAR fields and dataset types. This relationship is available in the CEDAR template schema, as shown below.
Once the CEDAR edge and node files contain the necessary edges between fields and dataset types, the field-assays endpoint in hs-ontology-api can be enhanced to include assay associations for CEDAR fields that are not already in the field-assays.yaml.
Dependency
CEDAR team