x-atlas-consortia / ubkg-neo4j

A container implementation to serve the Unified Biomedical Knowledge Graph in Neo4j
MIT License
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Add dataset nodes for new HuBMAP assay types #35

Closed AlanSimmons closed 1 month ago

AlanSimmons commented 9 months ago

Request

Add to the UBKG dataset information for new assays mentioned in the revised HuBMAP metadata page.

Amendment

After discussing with @shirey, limiting to just 10x Multiome and Visium for now.

AlanSimmons commented 9 months ago

New Assay/Dataset

Dataset Start Node End Node Comment
10x Multiome HUBMAP:C014000 HUBMAP:C014004 matches SenNet
Visium HUBMAP:C014100 HUBMAP:C014103 matches SenNet
AlanSimmons commented 9 months ago

Results of datasets endpoint in local

[ { "alt-names": [], "contains-pii": true, "data_type": "10x-multiome", "dataset_provider": "HuBMAP IEC", "description": "10x Multiome", "primary": true, "vis-only": false, "vitessce-hints": [] } ]

[ { "alt-names": [], "contains-pii": false, "data_type": "Visium", "dataset_provider": "HuBMAP IEC", "description": "Visium", "primary": true, "vis-only": false, "vitessce-hints": [] } ]

AlanSimmons commented 9 months ago

Integrated/regression test of UBKG API passed in local environment.