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xCompass-AI / GeneCompass

GeneCompass
https://xcompass-ai.github.io/GeneCompass/
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Questions about preprocessing #4

Open HelloWorldLTY opened 3 months ago

HelloWorldLTY commented 3 months ago

Hi, I notice that you have an example for pre-processing datasets, however, it seems that this code does not provide information for the approach of including metadata (cell type, dosage information) or splitting train/test dataset. Would you please share more information about how to use your model for our own dataset?

https://github.com/xCompass-AI/GeneCompass/blob/main/preprocess/preprocess.py

HelloWorldLTY commented 1 month ago

Moreover, I wonder that what is the difference between the preprocessed codes used here and the preprocessed codes used in Geneformer? It seems that they are both transferred with ranks. Can I directly use the codes from Geneformer to test this model? Thanks.