one more silly question

xavierdidelot / BactDating

Bayesian inference of ancestral dates on bacterial phylogenetic trees

https://xavierdidelot.github.io/BactDating

MIT License

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one more silly question #11

Closed fengyuchengdu closed 5 years ago

fengyuchengdu commented 5 years ago

Hi Xavier,

I'm just wondering how can I translate the coordinates/values of the internal nodes (e.g. a node of 3.123 with 95% CI of -8.679 to 12.369) to the real time in years (e.g. 2000.369 with CI 1998.348 to 2003.782).

Is there any table, like the one in BEAST which allows you to see how real time data is converted into values?

many thanks,

xavierdidelot commented 5 years ago

The res$CI already contains dates in real time, but if somehow you've lost this in your processing of the output, maybe you can convert from relative to real time using the date of the root which is stored in res$tree$root.time

maesaar commented 4 years ago

How to associate res$CI with the res$tree$node.label ?