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xavierdidelot / BactDating

Bayesian inference of ancestral dates on bacterial phylogenetic trees
https://xavierdidelot.github.io/BactDating
MIT License
80 stars 15 forks source link

the node data on exported plot #63

Closed chaolv123 closed 1 year ago

chaolv123 commented 1 year ago

Dear prof Xavier Didelot: In my exported plot, we want to show node data on the plot, though we got the node date used the code in 29#, but we failed in showing on the exported plot, could you share the code? thanks ! Chao

xavierdidelot commented 1 year ago

The code in #29 can be used to obtain the credible intervals for all nodes. To show this on the tree you can do simply plot(res,'treeCI'). For anything more advanced you can use as.treedata.resBactDating to export the result as a a treedata object from the ggtree package.