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xavierdidelot / ClonalFrameML

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
GNU General Public License v3.0
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Recombination events total #123

Closed martinastoycheva closed 3 years ago

martinastoycheva commented 3 years ago

Hello,

This is probably a a dumb question but I cannot figure out the answer so I apologise in advance for that! I ran ClonalFrameML for the first time and I am wondering how to get the total number of recombination events. There is an output file .importantion_status.txt and am I correct in thinking that if I count the number of lines of that file, it should give me the sum of the mutation and recombination events. How do I seperate out the number of recombination events only?

Cheers, Martina

xavierdidelot commented 3 years ago

Hi Martina,

This file .importantion_status.txt contains the list of recombination events only (not mutations) so if you count how many lines it contains you will get the total number of recombination events.

Best wishes, Xavier