Recombination filtered output vs importation_status.txt

xavierdidelot / ClonalFrameML

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

GNU General Public License v3.0

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Recombination filtered output vs importation_status.txt #133

Closed raufs closed 2 years ago

raufs commented 2 years ago

Hi Xavier,

Thank you for developing and maintaining this extremely useful program.

Should the recombination filtered output produced by "-output_filtered true" be equivalent to filtering the input FASTA alignment by all sites listed in the importation_status.txt output file?

Kind regards, Rauf

xavierdidelot commented 2 years ago

Hi Rauf,

Yes that is correct.

Best wishes, Xavier