Too many iterations error

xavierdidelot / TransPhylo

Reconstruction of transmission trees using genomic data

http://xavierdidelot.github.io/TransPhylo/

GNU General Public License v2.0

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Too many iterations error #11

Closed ksw9 closed 5 years ago

ksw9 commented 5 years ago

Hi, I'm coming across an error and was wondering how to suppress this so I can run long MCMC chains. My chain length is 10000. Thank you in advance! Error in probTTree(ttree$ttree, off.r2, off.p, pi, w.shape, w.scale, ws.shape, : too many iterations, giving up!

xavierdidelot commented 5 years ago

Hi Katie,

This should be solved by the commit on Oct 22, 2018. Could you please make sure that you are using the latest github version and report back?

Best wishes, Xavier

ksw9 commented 5 years ago

Dear Xavier, Thank you for the quick response! I should've checked that sooner - yes, the newest release fixes the issue. Best,