Error installing on Ubuntu 20.04

ebrahimraeyat commented 3 years ago

Hi @lcpt. I wanted to install XC on my Ubuntu 20 system. For installing dependency it seems there is no libgmsh3 package:

E: Unable to locate package libgmsh3

then I ran:

cmake ../xc_utils/src

but it gives me this error:

-- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found CMake Warning (dev) at /usr/share/cmake-3.16/Modules/FindOpenGL.cmake:275 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning.

FindOpenGL found both a legacy GL library:

OPENGL_gl_LIBRARY: /usr/lib/x86_64-linux-gnu/libGL.so

and GLVND libraries for OpenGL and GLX:

OPENGL_opengl_LIBRARY: /usr/lib/x86_64-linux-gnu/libOpenGL.so
OPENGL_glx_LIBRARY: /usr/lib/x86_64-linux-gnu/libGLX.so

OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): /home/ebi/xc/build_xc/xc_utils/CMake/find_packages.cmake:3 (find_package) CMakeLists.txt:37 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it.

-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libOpenGL.so
-- The imported target "vtkParseOGLExt" references the file "/usr/bin/vtkParseOGLExt-7.1" but this file does not exist. Possible reasons include:

The file was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and contained "/usr/lib/cmake/vtk-7.1/VTKTargets.cmake" but not all the files it references.

-- The imported target "vtkRenderingPythonTkWidgets" references the file "/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so" but this file does not exist. Possible reasons include:

The file was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and contained "/usr/lib/cmake/vtk-7.1/VTKTargets.cmake" but not all the files it references.

-- The imported target "vtk" references the file "/usr/bin/vtk" but this file does not exist. Possible reasons include:

The file was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and contained "/usr/lib/cmake/vtk-7.1/VTKTargets.cmake" but not all the files it references.

-- The imported target "pvtk" references the file "/usr/bin/pvtk" but this file does not exist. Possible reasons include:

The file was deleted, renamed, or moved to another location.
An install or uninstall procedure did not complete successfully.
The installation package was faulty and contained "/usr/lib/cmake/vtk-7.1/VTKTargets.cmake" but not all the files it references.

-- Some or all of the gtk libraries were not found. (missing: GTK2_GTK_LIBRARY GTK2_GTK_INCLUDE_DIR GTK2_GDK_INCLUDE_DIR GTK2_GDKCONFIG_INCLUDE_DIR GTK2_GDK_LIBRARY) CMake Error at /home/ebi/xc/build_xc/xc_utils/CMake/find_packages.cmake:7 (find_package): By not providing "FindCGAL.cmake" in CMAKE_MODULE_PATH this project has asked CMake to find a package configuration file provided by "CGAL", but CMake did not find one.

Could not find a package configuration file provided by "CGAL" with any of the following names:

CGALConfig.cmake
cgal-config.cmake

Add the installation prefix of "CGAL" to CMAKE_PREFIX_PATH or set "CGAL_DIR" to a directory containing one of the above files. If "CGAL" provides a separate development package or SDK, be sure it has been installed. Call Stack (most recent call first): CMakeLists.txt:37 (INCLUDE)

-- Configuring incomplete, errors occurred! See also "/home/ebi/xc/build_xc/build-xc_utils/CMakeFiles/CMakeOutput.log". ebi@kubuntu20-Lenovo-Z51-70:~/xc/build_xc/build-xc_utils$

I used this help for installation:

https://github.com/xcfem/xc/blob/master/install/install.scripts.linux.md#ubuntu-focal-fossa-ubuntu-20

Thanks alot.

Originally posted by @ebrahimraeyat in https://github.com/xcfem/xc/discussions/67

lcpt commented 3 years ago

Hi @ebrahimraeyat

There was an error in a package name here: https://github.com/xcfem/xc/blob/5dcb28d6ef0acf863de5244a4135c7f92915431a/install/packages_install_ubuntu_focal_fossa.sh#L39

I've fixed it. Could you download packages_install_ubuntu_focal_fossa.sh again and give it a try?

Thanks.

ebrahimraeyat commented 3 years ago

Thanks, it corrected this error and compile xc_utils complete. the test passes. but for compiling XC, in 95% it gives me this error:

[ 95%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/3d/UniformGrid.cc.o
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc: In member function ‘void XC::Block::create_nodes()’:
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:449:19: warning: unused variable ‘top’ [-Wunused-variable]
  449 |         BodyFace &top= sups[5];
      |                   ^~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:450:19: warning: unused variable ‘leftFace’ [-Wunused-variable]
  450 |         BodyFace &leftFace= sups[1];
      |                   ^~~~~~~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:451:19: warning: unused variable ‘rightFace’ [-Wunused-variable]
  451 |         BodyFace &rightFace= sups[3];
      |                   ^~~~~~~~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:452:19: warning: unused variable ‘frontFace’ [-Wunused-variable]
  452 |         BodyFace &frontFace= sups[2];
      |                   ^~~~~~~~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:453:19: warning: unused variable ‘backFace’ [-Wunused-variable]
  453 |         BodyFace &backFace= sups[4];
      |                   ^~~~~~~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:477:21: warning: unused variable ‘n3’ [-Wunused-variable]
  477 |         const Node *n3= ttzNodes(1,n_rows,n_cols);
      |                     ^~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:479:21: warning: unused variable ‘n5’ [-Wunused-variable]
  479 |         const Node *n5= ttzNodes(n_layers,1,1);
      |                     ^~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:480:21: warning: unused variable ‘n6’ [-Wunused-variable]
  480 |         const Node *n6= ttzNodes(n_layers,n_rows,1);
      |                     ^~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:481:21: warning: unused variable ‘n7’ [-Wunused-variable]
  481 |         const Node *n7= ttzNodes(n_layers,n_rows,n_cols);
      |                     ^~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/3d/Block.cc:482:21: warning: unused variable ‘n8’ [-Wunused-variable]
  482 |         const Node *n8= ttzNodes(n_layers,1,n_cols);
      |                     ^~
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2

ebrahimraeyat commented 3 years ago

Continuing of above error:

[sudo] password for ebi: 
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function ‘int XC::PolygonalFace::create_elements_from_gmsh(const std::map<int, const XC::Node*>&)’:
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:620:129: error: too many arguments to function ‘void gmsh::model::mesh::getElementProperties(int, std::string&, int&, int&, int&, std::vector<double>&)’
  620 |      gmsh::model::mesh::getElementProperties(elementTypes[i], elementName, dim, order, numNodes, localNodeCoord, numPrimaryNodes);
      |                                                                                                                                 ^
In file included from /home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:39:
/usr/include/gmsh.h:557:21: note: declared here
  557 |       GMSH_API void getElementProperties(const int elementType,
      |                     ^~~~~~~~~~~~~~~~~~~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function ‘void XC::PolygonalFace::gen_mesh_gmsh(XC::meshing_dir)’:
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:700:15: warning: unused variable ‘numElements’ [-Wunused-variable]
  700 |     const int numElements= create_elements_from_gmsh(mapNodes);
      |               ^~~~~~~~~~~
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2
path to libs: /usr/local/lib/python3.8/dist-packages
running install
running build
running build_py
running install_lib
running install_data
error: can't copy 'extensions/xc.so': doesn't exist or not a regular file
Updating installed files history.
cat: installed_files.txt: No such file or directory
rm: cannot remove 'installed_files.txt': No such file or directory

 Misc. tests. 
test  test_evalPy.py : ok.
test  test_execPy.py : ok.
test  testStairCaseFunction.py : ok.
test  test_linear_interpolation.py : ok.
 Soil mechanics. 
test  test_mononobe_okabe.py : ok.
.
.
.
12.783867642 seconds
76 tests
.16820878476315789473 seconds/test

 Actions tests. 
test  test_snowSIA.py : ok.
test  test_windSIA.py : ok.
Traceback (most recent call last):
  File "tests/actions/test_wind_cylindr_01.py", line 9, in <module>
    from actions.wind import base_wind as bw
  File "/usr/local/lib/python3.8/dist-packages/actions/wind/base_wind.py", line 14, in <module>
    import xc
ModuleNotFoundError: No module named 'xc'

as you see, the test for xc_utils passes, but XC not compiled.

thanks.

MaximilianFranz commented 3 years ago

Hey everyone,

just started putting together a Dockerfile based on Ubuntu 20.04 and stumbled across the same issue as @ebrahimraeyat:

$ sudo python3 setup.py install
path to libs: /usr/lib/python3.8/dist-packages
running install
running build
running build_py
running install_lib
running install_data
error: can't copy 'extensions/xc.so': doesn't exist or not a regular file

I use python3 directly, because in plain ubuntu doesn't have a python version install. In general, we should aim to use python within a conda environment or something, if that is a viable option, @lcpt ?

I'll see if I find a solution for above problem and keep you posted!

Thanks for the cool project, keep doing the good work!

MaximilianFranz commented 3 years ago

More specifially, extensions/xc.so in python_modules is a link:

$ ls -ls extensions/
0 lrwxrwxrwx 1 root root 15 Dec 19 22:01 xc.so -> ../../lib/xc.so

but lib is empty..

Also, I found that running make -j 2 in xc-build leads to an error, which seems to be skipped in the install script somehow:

root@e9e08f326e4a:/modugen/build_xc/build-xc# make
Scanning dependencies of target XcBib
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'int XC::PolygonalFace::create_elements_from_gmsh(const std::map<int, const XC::Node*>&)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:620:129: error: too many arguments to function 'void gmsh::model::mesh::getElementProperties(int, std::string&, int&, int&, int&, std::vector<double>&)'
  620 |      gmsh::model::mesh::getElementProperties(elementTypes[i], elementName, dim, order, numNodes, localNodeCoord, numPrimaryNodes);
      |                                                                                                                                 ^
In file included from /modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:39:
/usr/include/gmsh.h:557:21: note: declared here
  557 |       GMSH_API void getElementProperties(const int elementType,
      |                     ^~~~~~~~~~~~~~~~~~~~
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'void XC::PolygonalFace::gen_mesh_gmsh(XC::meshing_dir)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:700:15: warning: unused variable 'numElements' [-Wunused-variable]
  700 |     const int numElements= create_elements_from_gmsh(mapNodes);
      |               ^~~~~~~~~~~
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2
root@e9e08f326e4a:/modugen/build_xc/build-xc# make -j 2
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/3d/Body.cc.o
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'int XC::PolygonalFace::create_elements_from_gmsh(const std::map<int, const XC::Node*>&)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:620:129: error: too many arguments to function 'void gmsh::model::mesh::getElementProperties(int, std::string&, int&, int&, int&, std::vector<double>&)'
  620 |      gmsh::model::mesh::getElementProperties(elementTypes[i], elementName, dim, order, numNodes, localNodeCoord, numPrimaryNodes);
      |                                                                                                                                 ^
In file included from /modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:39:
/usr/include/gmsh.h:557:21: note: declared here
  557 |       GMSH_API void getElementProperties(const int elementType,
      |                     ^~~~~~~~~~~~~~~~~~~~
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'void XC::PolygonalFace::gen_mesh_gmsh(XC::meshing_dir)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:700:15: warning: unused variable 'numElements' [-Wunused-variable]
  700 |     const int numElements= create_elements_from_gmsh(mapNodes);
      |               ^~~~~~~~~~~
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2

MaximilianFranz commented 3 years ago

Seems like the error occurs in the build and hence the library file is not written, yet the script continues..

lcpt commented 3 years ago

Continuing of above error:

[sudo] password for ebi: 
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function ‘int XC::PolygonalFace::create_elements_from_gmsh(const std::map<int, const XC::Node*>&)’:
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:620:129: error: too many arguments to function ‘void gmsh::model::mesh::getElementProperties(int, std::string&, int&, int&, int&, std::vector<double>&)’
  620 |      gmsh::model::mesh::getElementProperties(elementTypes[i], elementName, dim, order, numNodes, localNodeCoord, numPrimaryNodes);
      |                                                                                                                                 ^
In file included from /home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:39:
/usr/include/gmsh.h:557:21: note: declared here
  557 |       GMSH_API void getElementProperties(const int elementType,
      |                     ^~~~~~~~~~~~~~~~~~~~
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function ‘void XC::PolygonalFace::gen_mesh_gmsh(XC::meshing_dir)’:
/home/ebi/xc/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:700:15: warning: unused variable ‘numElements’ [-Wunused-variable]
  700 |     const int numElements= create_elements_from_gmsh(mapNodes);
      |               ^~~~~~~~~~~
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2
path to libs: /usr/local/lib/python3.8/dist-packages
running install
running build
running build_py
running install_lib
running install_data
error: can't copy 'extensions/xc.so': doesn't exist or not a regular file
Updating installed files history.
cat: installed_files.txt: No such file or directory
rm: cannot remove 'installed_files.txt': No such file or directory

 Misc. tests. 
test  test_evalPy.py : ok.
test  test_execPy.py : ok.
test  testStairCaseFunction.py : ok.
test  test_linear_interpolation.py : ok.
 Soil mechanics. 
test  test_mononobe_okabe.py : ok.
.
.
.
12.783867642 seconds
76 tests
.16820878476315789473 seconds/test

 Actions tests. 
test  test_snowSIA.py : ok.
test  test_windSIA.py : ok.
Traceback (most recent call last):
  File "tests/actions/test_wind_cylindr_01.py", line 9, in <module>
    from actions.wind import base_wind as bw
  File "/usr/local/lib/python3.8/dist-packages/actions/wind/base_wind.py", line 14, in <module>
    import xc
ModuleNotFoundError: No module named 'xc'

as you see, the test for xc_utils passes, but XC not compiled.

thanks.

It's an error related to the version of the Gmsh API. I'm fixing it.

lcpt commented 3 years ago

More specifially, extensions/xc.so in python_modules is a link:

$ ls -ls extensions/
0 lrwxrwxrwx 1 root root 15 Dec 19 22:01 xc.so -> ../../lib/xc.so

but lib is empty..

Also, I found that running make -j 2 in xc-build leads to an error, which seems to be skipped in the install script somehow:

root@e9e08f326e4a:/modugen/build_xc/build-xc# make
Scanning dependencies of target XcBib
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'int XC::PolygonalFace::create_elements_from_gmsh(const std::map<int, const XC::Node*>&)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:620:129: error: too many arguments to function 'void gmsh::model::mesh::getElementProperties(int, std::string&, int&, int&, int&, std::vector<double>&)'
  620 |      gmsh::model::mesh::getElementProperties(elementTypes[i], elementName, dim, order, numNodes, localNodeCoord, numPrimaryNodes);
      |                                                                                                                                 ^
In file included from /modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:39:
/usr/include/gmsh.h:557:21: note: declared here
  557 |       GMSH_API void getElementProperties(const int elementType,
      |                     ^~~~~~~~~~~~~~~~~~~~
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'void XC::PolygonalFace::gen_mesh_gmsh(XC::meshing_dir)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:700:15: warning: unused variable 'numElements' [-Wunused-variable]
  700 |     const int numElements= create_elements_from_gmsh(mapNodes);
      |               ^~~~~~~~~~~
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2
root@e9e08f326e4a:/modugen/build_xc/build-xc# make -j 2
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o
[  0%] Building CXX object CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/3d/Body.cc.o
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'int XC::PolygonalFace::create_elements_from_gmsh(const std::map<int, const XC::Node*>&)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:620:129: error: too many arguments to function 'void gmsh::model::mesh::getElementProperties(int, std::string&, int&, int&, int&, std::vector<double>&)'
  620 |      gmsh::model::mesh::getElementProperties(elementTypes[i], elementName, dim, order, numNodes, localNodeCoord, numPrimaryNodes);
      |                                                                                                                                 ^
In file included from /modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:39:
/usr/include/gmsh.h:557:21: note: declared here
  557 |       GMSH_API void getElementProperties(const int elementType,
      |                     ^~~~~~~~~~~~~~~~~~~~
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc: In member function 'void XC::PolygonalFace::gen_mesh_gmsh(XC::meshing_dir)':
/modugen/build_xc/xc/src/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc:700:15: warning: unused variable 'numElements' [-Wunused-variable]
  700 |     const int numElements= create_elements_from_gmsh(mapNodes);
      |               ^~~~~~~~~~~
make[2]: *** [CMakeFiles/XcBib.dir/build.make:15897: CMakeFiles/XcBib.dir/preprocessor/multi_block_topology/entities/2d/PolygonalFace.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:107: CMakeFiles/XcBib.dir/all] Error 2
make: *** [Makefile:130: all] Error 2

Hi.

It's the same error (different Gmsh API versions). Working on it.

MaximilianFranz commented 3 years ago

Jep it is. Thanks! :)

MaximilianFranz commented 3 years ago

It's the same error (different Gmsh API versions). Working on it.

Which version should it be? Can we solve it by just pinning the version in the dependencies?

lcpt commented 3 years ago

Hi again.

I think it's solved. Now it works with Gmsh 4.4 (the version that comes with Ubuntu 20.04) and 4.7 (the version I installed in Ubuntu 18.04 some months ago).

I've fixed some other minor caveats, so you'll need to download packages_install_ubuntu_focal_fossa.sh and run it again. You will also need to pull both repositories: xc_utils and xc and repeat the compiling/installing process (this time it will be faster; only a small part of the c++ code of the xc repository has been modified).

If you found any further problems, please let me know.

lcpt commented 3 years ago

I'll close this. We can always reopen if needed.

MaximilianFranz commented 3 years ago

Jep, I am running the build right now. I'll let you now if any new errors arise.

MaximilianFranz commented 3 years ago

Works like a charm! Thank's alot for the fast reply!

lcpt commented 3 years ago

My pleasure!

ebrahimraeyat commented 3 years ago

Fixed, thanks a lot. Only problem with two tests: 1- for pyexcel library, it seems it is not in installation dependencies:

import pyexcel as pe
ModuleNotFoundError: No module named 'pyexcel'

2- it seems it is warning:

 Verifiying routines for rough calculations,... 
test  test_punzo01.py : ok.
...
test  test_base_plate_design.py : ok.
**convert-im6.q16: attempt to perform an operation not allowed by the security policy `EPS' @ error/constitute.c/IsCoderAuthorized/408.**
test  retaining_wall_test_01.py : ok.
 Verifiying routines for post processing.

Thank you so much.

lcpt commented 3 years ago

Hi @ebrahimraeyat.

About the pyexcel problem, yesterday I added the following lines:

sudo -H pip3 install pyexcel
sudo -H pip3 install pyexcel-ods

To the packages_install_ubuntu_focal_fossa.sh script, so normally the problem is addressed now.

The second problem occurs when using ImageMagick convert command with postscript or PDF files. Some time ago PDF was disabled due to its inherent insecurity. You can remove this policy if you want (I did, but I don't remember how). Anyway I will make the conversion to postscript optional to avoid this error.

ebrahimraeyat commented 3 years ago

Thank you so much.

lcpt commented 3 years ago

I've made creation of postscript files optional. Could you run retaining_wall_test_01.py again to see if it works?

ebrahimraeyat commented 3 years ago

ebi@kubuntu20-Lenovo-Z51-70:~/xc/build_xc/xc/verif$ python tests/rough_calculations/retaining_wall_test_01.py
convert-im6.q16: attempt to perform an operation not allowed by the security policy `EPS' @ error/constitute.c/IsCoderAuthorized/408.
test  retaining_wall_test_01.py : ok.
ebi@kubuntu20-Lenovo-Z51-70:~/xc/build_xc/xc/verif$

thanks a lot.

lcpt commented 3 years ago

So the error persists...

Have you reinstalled the updated python modules?

cd xc/python_modules
sh local_install.sh

ebrahimraeyat commented 3 years ago

So the error persists...

Have you reinstalled the updated python modules?
cd xc/python_modules
sh local_install.sh

oh, No, I did it and error fixed, thanks.

ebi@kubuntu20-Lenovo-Z51-70:~/xc/build_xc/xc/verif$ python tests/rough_calculations/retaining_wall_test_01.py
test  retaining_wall_test_01.py : ok.
ebi@kubuntu20-Lenovo-Z51-70:~/xc/build_xc/xc/verif$

lcpt commented 3 years ago

Perfect. Thanks to you.

xcfem / xc

Error installing on Ubuntu 20.04 #68