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xdomingoal / erah-devel

eRah development version. For downloads, please use CRAN
http://xdomingoal.github.io/erah-devel/
GNU General Public License v3.0
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erah deconvolution error (erah::deconvolveComp) #17

Open jjoseenrique opened 1 year ago

jjoseenrique commented 1 year ago

I'm doing some test with the erah package, following the tutorial, and when I get to the deconvolution step, there's an error that I can't solve. I've imported different .cdf files, and when I run the code:

ex=deconvolveComp(ex,ex.dec.par)

It appears the following error:

Deconvolving compounds from Cromas/23001t__3.cdf ... Processing 1 / 4 
Error in if (class(solv.m) == "try-error") { : 
  the condition has length > 1

 Deconvolving compounds from Cromas/23001t__4.cdf ... Processing 2 / 4 
Error in if (class(solv.m) == "try-error") { : 
  the condition has length > 1
In addition: Warning message:
In processSample(Experiment, index, plotting, down.sample, virtual.scans.ps) :
  Unable to extract factors from Cromas/23001t__3.cdf. Data may be corrupted.

 Deconvolving compounds from Mal/23001t__5.cdf ... Processing 3 / 4 
Error in if (class(solv.m) == "try-error") { : 
  the condition has length > 1
In addition: Warning message:
In processSample(Experiment, index, plotting, down.sample, virtual.scans.ps) :
  Unable to extract factors from Cromas/23001t__4.cdf. Data may be corrupted.

 Deconvolving compounds from Mal/23001t__6.cdf ... Processing 4 / 4 
Error in if (class(solv.m) == "try-error") { : 
  the condition has length > 1
In addition: Warning message:
In processSample(Experiment, index, plotting, down.sample, virtual.scans.ps) :
  Unable to extract factors from Mal/23001t__5.cdf. Data may be corrupted.

 Compounds deconvolved 
Warning message:
In processSample(Experiment, index, plotting, down.sample, virtual.scans.ps) :
  Unable to extract factors from Mal/23001t__6.cdf. Data may be corrupted.

I've tried several variations, but I can't find the solution.

Thanks

xdomingoal commented 1 year ago

Hi @jjoseenrique,

please send me an email with one of the data files along with the script used and I'll try to find the issue.

Thanks,

Xavi

ElvyWanjaya commented 1 year ago

Hello Xavier and jjoseenrique, I am having the same error as above when I run the deconvolveComp function, may I know whether the issue has been solved? Thank you!

jjoseenrique commented 1 year ago

Hi @ElvyWanjaya! If I am not wrong, I solved it just installing the package from github install_github("xdomingoal/erah-devel") instead of from CRAN install.packages('erah'). Here is a link to the same issue.

Sincerely

José Enrique

ElvyWanjaya commented 1 year ago

Hello José,

Thank you so much for your prompt reply!

I tried typing install_github("xdomingoal/erah-devel") but I still get error message as shown below: [image: image.png]

This is what I type: install.packages("devtools") library("devtools") install_github("xdomingoal/erah_devel")

Could you please let me know where I may have gone wrong?

Thank you so much for your help!

Best regards, Elvy

On Fri, Jul 28, 2023 at 3:43 PM José Enrique Pérez-Martín < @.***> wrote:

Hi @ElvyWanjaya https://github.com/ElvyWanjaya! If I am not wrong, I solved it just installing the package from github install_github("xdomingoal/erah-devel") instead of from CRAN install.packages('erah'). Here https://github.com/sneumann/mzR/issues/226#issuecomment-1470268815 is a link to the same issue.

Sincerely

José Enrique

— Reply to this email directly, view it on GitHub https://github.com/xdomingoal/erah-devel/issues/17#issuecomment-1655205231, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBRW6LYMYHA6OCJNN7KS5X3XSNURTANCNFSM6AAAAAAV2OQIXU . You are receiving this because you were mentioned.Message ID: @.***>

jjoseenrique commented 1 year ago

Hello José, Thank you so much for your prompt reply! I tried typing install_github("xdomingoal/erah-devel") but I still get error message as shown below: [image: image.png] This is what I type: install.packages("devtools") library("devtools") install_github("xdomingoal/erah_devel") Could you please let me know where I may have gone wrong? Thank you so much for your help! Best regards, Elvy … On Fri, Jul 28, 2023 at 3:43 PM José Enrique Pérez-Martín < @.> wrote: Hi @ElvyWanjaya https://github.com/ElvyWanjaya! If I am not wrong, I solved it just installing the package from github install_github("xdomingoal/erah-devel") instead of from CRAN install.packages('erah'). Here <sneumann/mzR#226 (comment)> is a link to the same issue. Sincerely José Enrique — Reply to this email directly, view it on GitHub <#17 (comment)>, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBRW6LYMYHA6OCJNN7KS5X3XSNURTANCNFSM6AAAAAAV2OQIXU . You are receiving this because you were mentioned.Message ID: @.>

Hi Elvy,

I can't open the picture attached to the message, could you please send it again?

Sincerely,

José Enrique

ElvyWanjaya commented 1 year ago

Hello José,

Here is the error message:

library("devtools")Loading required package: usethis> install_github("xdomingoal/erah_devel")Error: Failed to install 'unknown package' from GitHub: HTTP error 404. Not Found

Did you spell the repo owner (xdomingoal) and repo name (erah_devel) correctly?

Thank you! Best regards, Elvy

On Fri, Jul 28, 2023 at 4:30 PM José Enrique Pérez-Martín < @.***> wrote:

Hello José, Thank you so much for your prompt reply! I tried typing install_github("xdomingoal/erah-devel") but I still get error message as shown below: [image: image.png] This is what I type: install.packages("devtools") library("devtools") install_github("xdomingoal/erah_devel") Could you please let me know where I may have gone wrong? Thank you so much for your help! Best regards, Elvy … <#m7977092146692389539> On Fri, Jul 28, 2023 at 3:43 PM José Enrique Pérez-Martín < @.> wrote: Hi @ElvyWanjaya https://github.com/ElvyWanjaya https://github.com/ElvyWanjaya https://github.com/ElvyWanjaya! If I am not wrong, I solved it just installing the package from github install_github("xdomingoal/erah-devel") instead of from CRAN install.packages('erah'). Here <sneumann/mzR#226 (comment) https://github.com/sneumann/mzR/issues/226#issuecomment-1470268815> is a link to the same issue. Sincerely José Enrique — Reply to this email directly, view it on GitHub <#17 (comment) https://github.com/xdomingoal/erah-devel/issues/17#issuecomment-1655205231>, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBRW6LYMYHA6OCJNN7KS5X3XSNURTANCNFSM6AAAAAAV2OQIXU https://github.com/notifications/unsubscribe-auth/BBRW6LYMYHA6OCJNN7KS5X3XSNURTANCNFSM6AAAAAAV2OQIXU . You are receiving this because you were mentioned.Message ID: @.>

Hi Elvy,

I can't open the picture attached to the message, could you please send it again?

Sincerely,

José Enrique

— Reply to this email directly, view it on GitHub https://github.com/xdomingoal/erah-devel/issues/17#issuecomment-1655270663, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBRW6L45RRBX2OR35WBCDQLXSN2CBANCNFSM6AAAAAAV2OQIXU . You are receiving this because you were mentioned.Message ID: @.***>

jjoseenrique commented 1 year ago

library("devtools")Loading required package: usethis> install_github("xdomingoal/erah_devel")Error: Failed to install 'unknown package' from GitHub:

Hi Elvy,

It's not erah_devel but erah-devel. Try it again that way, I hope it works!

Sincerely,

José Enrique

ElvyWanjaya commented 1 year ago

Hello José,

Thanks for helping out, I am able to install the package after typing erah-devel. However, I still have error and unable to process my data properly. It seems that this erah-devel package install 10 different packages, such as parallelly, listenv, globals, future, hms, JADE, furrr, progress, HiClimR, osd. Am I supposed to load all 10 packages before trying out data processing? There is no "erah-devel" package in my Rstudio so I cannot load "erah-devel". Here are the scripts that I typed and error messages, once again thanks a lot for your help!

Best regards, Elvy

library("devtools")Loading required package: usethis> install_github("xdomingoal/erah-devel")Downloading GitHub repo @.*** 10 packages: parallelly, listenv, globals, future, hms, JADE, furrr, progress, HiClimR, osdInstalling packages into ‘C:/Users/wanjer/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified)trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/parallelly_1.36.0.zip'Content type 'application/zip' length 350299 bytes (342 KB)downloaded 342 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/listenv_0.9.0.zip'Content type 'application/zip' length 108533 bytes (105 KB)downloaded 105 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/globals_0.16.2.zip'Content type 'application/zip' length 106831 bytes (104 KB)downloaded 104 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/future_1.33.0.zip'Content type 'application/zip' length 676336 bytes (660 KB)downloaded 660 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/hms_1.1.3.zip'Content type 'application/zip' length 104175 bytes (101 KB)downloaded 101 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/JADE_2.0-3.zip'Content type 'application/zip' length 2454435 bytes (2.3 MB)downloaded 2.3 MB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/furrr_0.3.1.zip'Content type 'application/zip' length 1023610 bytes (999 KB)downloaded 999 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/progress_1.2.2.zip'Content type 'application/zip' length 85957 bytes (83 KB)downloaded 83 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/HiClimR_2.2.1.zip'Content type 'application/zip' length 587338 bytes (573 KB)downloaded 573 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/osd_0.1.zip'Content type 'application/zip' length 212624 bytes (207 KB)downloaded 207 KB package ‘parallelly’ successfully unpacked and MD5 sums checked package ‘listenv’ successfully unpacked and MD5 sums checked package ‘globals’ successfully unpacked and MD5 sums checked package ‘future’ successfully unpacked and MD5 sums checked package ‘hms’ successfully unpacked and MD5 sums checked package ‘JADE’ successfully unpacked and MD5 sums checked package ‘furrr’ successfully unpacked and MD5 sums checked package ‘progress’ successfully unpacked and MD5 sums checked package ‘HiClimR’ successfully unpacked and MD5 sums checked package ‘osd’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\wanjer\AppData\Local\Temp\RtmpoJ0TIm\downloaded_packages── R CMD build ────────────────────────────────────────────────────────✔ checking for file 'C:\Users\wanjer\AppData\Local\Temp\RtmpoJ0TIm\remotes58d034b52904\xdomingoal-erah-devel-cf015e7/DESCRIPTION' (512ms)─ preparing 'erah':✔ checking DESCRIPTION meta-information ... ─ cleaning src─ checking for LF line-endings in source and make files and shell scripts─ checking for empty or unneeded directories─ building 'erah_2.0.0.tar.gz' Installing package into ‘C:/Users/wanjer/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified) installing source* package 'erah' ... using staged installation libs using C compiler: 'gcc.exe (GCC) 12.2.0' gcc -I"C:/PROGRA~1/R/R-43~1.1/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc -I"C:/PROGRA~1/R/R-43~1.1/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c runfunc.c -o runfunc.o gcc -shared -s -static-libgcc -o erah.dll tmp.def registerDynamicSymbol.o runfunc.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LC:/PROGRA~1/R/R-43~1.1/bin/x64 -lR installing to C:/Users/wanjer/AppData/Local/R/win-library/4.3/00LOCK-erah/00new/erah/libs/x64 R data * moving datasets to lazyload DB inst byte-compile and prepare package for lazy loading * help installing help indices building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path

Data processed with Info attached to this experiment:

View(erah.out)> View(erah.out)> > View(erah.out.rice)> library("xdomingoal/erah-devel")Error in library("xdomingoal/erah-devel") : there is no package called ‘xdomingoal/erah-devel’> library("erah-devel")Error in library("erah-devel") : there is no package called ‘erah-devel’

On Fri, Jul 28, 2023 at 5:58 PM José Enrique Pérez-Martín < @.***> wrote:

library("devtools")Loading required package: usethis> install_github("xdomingoal/erah_devel")Error: Failed to install 'unknown package' from GitHub:

Hi Elvy,

It's not erah_devel but erah-devel. Try it again that way, I hope it works!

Sincerely,

José Enrique

— Reply to this email directly, view it on GitHub https://github.com/xdomingoal/erah-devel/issues/17#issuecomment-1655414545, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBRW6L5AEGUEGILM5I43P5TXSOELTANCNFSM6AAAAAAV2OQIXU . You are receiving this because you were mentioned.Message ID: @.***>

jjoseenrique commented 1 year ago

Hello José, Thanks for helping out, I am able to install the package after typing erah-devel. However, I still have error and unable to process my data properly. It seems that this erah-devel package install 10 different packages, such as parallelly, listenv, globals, future, hms, JADE, furrr, progress, HiClimR, osd. Am I supposed to load all 10 packages before trying out data processing? There is no "erah-devel" package in my Rstudio so I cannot load "erah-devel". Here are the scripts that I typed and error messages, once again thanks a lot for your help! Best regards, Elvy library("devtools")Loading required package: usethis> install_github("xdomingoal/erah-devel")Downloading GitHub repo @. 10 packages: parallelly, listenv, globals, future, hms, JADE, furrr, progress, HiClimR, osdInstalling packages into ‘C:/Users/wanjer/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified)trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/parallelly_1.36.0.zip'Content type 'application/zip' length 350299 bytes (342 KB)downloaded 342 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/listenv_0.9.0.zip'Content type 'application/zip' length 108533 bytes (105 KB)downloaded 105 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/globals_0.16.2.zip'Content type 'application/zip' length 106831 bytes (104 KB)downloaded 104 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/future_1.33.0.zip'Content type 'application/zip' length 676336 bytes (660 KB)downloaded 660 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/hms_1.1.3.zip'Content type 'application/zip' length 104175 bytes (101 KB)downloaded 101 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/JADE_2.0-3.zip'Content type 'application/zip' length 2454435 bytes (2.3 MB)downloaded 2.3 MB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/furrr_0.3.1.zip'Content type 'application/zip' length 1023610 bytes (999 KB)downloaded 999 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/progress_1.2.2.zip'Content type 'application/zip' length 85957 bytes (83 KB)downloaded 83 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/HiClimR_2.2.1.zip'Content type 'application/zip' length 587338 bytes (573 KB)downloaded 573 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/osd_0.1.zip'Content type 'application/zip' length 212624 bytes (207 KB)downloaded 207 KB package ‘parallelly’ successfully unpacked and MD5 sums checked package ‘listenv’ successfully unpacked and MD5 sums checked package ‘globals’ successfully unpacked and MD5 sums checked package ‘future’ successfully unpacked and MD5 sums checked package ‘hms’ successfully unpacked and MD5 sums checked package ‘JADE’ successfully unpacked and MD5 sums checked package ‘furrr’ successfully unpacked and MD5 sums checked package ‘progress’ successfully unpacked and MD5 sums checked package ‘HiClimR’ successfully unpacked and MD5 sums checked package ‘osd’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\wanjer\AppData\Local\Temp\RtmpoJ0TIm\downloaded_packages── R CMD build ────────────────────────────────────────────────────────✔ checking for file 'C:\Users\wanjer\AppData\Local\Temp\RtmpoJ0TIm\remotes58d034b52904\xdomingoal-erah-devel-cf015e7/DESCRIPTION' (512ms)─ preparing 'erah':✔ checking DESCRIPTION meta-information ... ─ cleaning src─ checking for LF line-endings in source and make files and shell scripts─ checking for empty or unneeded directories─ building 'erah_2.0.0.tar.gz' Installing package into ‘C:/Users/wanjer/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified) installing source package 'erah' ... using staged installation libs using C compiler: 'gcc.exe (GCC) 12.2.0' gcc -I"C:/PROGRA~1/R/R-43~1.1/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc -I"C:/PROGRA~1/R/R-43~1.1/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c runfunc.c -o runfunc.o gcc -shared -s -static-libgcc -o erah.dll tmp.def registerDynamicSymbol.o runfunc.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LC:/PROGRA~1/R/R-43~1.1/bin/x64 -lR installing to C:/Users/wanjer/AppData/Local/R/win-library/4.3/00LOCK-erah/00new/erah/libs/x64 R data moving datasets to lazyload DB inst byte-compile and prepare package for lazy loading help installing help indices building package indices installing vignettes testing if installed package can be loaded from temporary location testing if installed package can be loaded from final location testing if installed package keeps a record of temporary installation path DONE (erah)> library(erah) __ | \ | | eRah R package: | |) | | | ---------------- / \ // ` | \ Untargeted GC-MS metabolomics profiling | / | \ \ (| | | | | \|| __,|| |_| Version 2.0.0 - Type 'citation('erah')' for citing this R package in publications. - Type 'vignette('eRahManual', package='erah')' for a tutorial on eRah's usage. - For bugs, problems and issues, please do not hesitate in contacting @. or opening an issue on the Github repository (https://github.com/xdomingoal/erah-devel/issues).> setwd("C:/Users/wanjer/OneDrive - Wilmar International Limited/Rstudio/RU aged rice/data")> createdt("C:/Users/wanjer/OneDrive - Wilmar International Limited/Rstudio/RU aged rice/data")> erah.out <- newExp (instrumental = "data_inst.csv", phenotype = "data_pheno.csv")> dec.par <- setDecPar(min.peak.width = 1, avoid.processing.mz = c(0), analysis.time = c(5,15))> erah.out.rice <- deconvolveComp(erah.out, dec.par)Error in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of boundsError in CorGen[, j] : subscript out of bounds Deconvolving compounds from samples/RU_wk_0_water_17Apr23.mzXML ... Processing 1 / 10 Deconvolving compounds from samples/RU_wk_1_water_17Apr23.mzXML ... Processing 2 / 10 Deconvolving compounds from samples/RU_wk_2_water_17Apr23.mzXML ... Processing 3 / 10 Deconvolving compounds from samples/RU_wk_3_water_17Apr23.mzXML ... Processing 4 / 10 Deconvolving compounds from samples/RU_wk_4_water_17Apr23.mzXML ... Processing 5 / 10 Deconvolving compounds from samples/RU_wk_5_water_17Apr23.mzXML ... Processing 6 / 10 Deconvolving compounds from samples/RU_wk_6_water_17Apr23.mzXML ... Processing 7 / 10 Deconvolving compounds from samples/RU_wk_7_water_17Apr23.mzXML ... Processing 8 / 10 Deconvolving compounds from samples/RU_wk_8_water_17Apr23.mzXML ... Processing 9 / 10 Deconvolving compounds from samples/RU_wk_9_water_17Apr23.mzXML ... Processing 10 / 10 Compounds deconvolved There were 11 warnings (use warnings() to see them)> warnings()Warning messages: 1: In fun(libname, pkgname) : mzR has been built against a different Rcpp version (1.0.10) than is installed on your system (1.0.11). This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc support forum at https://support.bioconductor.org/. For details see alsohttps://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue. 2: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_0_water_17Apr23.mzXML. Data may be corrupted. 3: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_1_water_17Apr23.mzXML. Data may be corrupted. 4: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_2_water_17Apr23.mzXML. Data may be corrupted. 5: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_3_water_17Apr23.mzXML. Data may be corrupted. 6: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_4_water_17Apr23.mzXML. Data may be corrupted. 7: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_5_water_17Apr23.mzXML. Data may be corrupted. 8: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_6_water_17Apr23.mzXML. Data may be corrupted. 9: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_7_water_17Apr23.mzXML. Data may be corrupted. 10: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_8_water_17Apr23.mzXML. Data may be corrupted. 11: In processSample(Experiment, .x, plotting, down.sample, ... : Unable to extract factors from samples/RU_wk_9_water_17Apr23.mzXML. Data may be corrupted.> erah.out.riceA "MetaboSet" object containing 10 samples Data processed with Info attached to this experiment: View(erah.out)> View(erah.out)> > View(erah.out.rice)> library("xdomingoal/erah-devel")Error in library("xdomingoal/erah-devel") : there is no package called ‘xdomingoal/erah-devel’> library("erah-devel")Error in library("erah-devel") : there is no package called ‘erah-devel’ … On Fri, Jul 28, 2023 at 5:58 PM José Enrique Pérez-Martín < @.> wrote: library("devtools")Loading required package: usethis> install_github("xdomingoal/erah_devel")Error: Failed to install 'unknown package' from GitHub: Hi Elvy, It's not erah_devel but erah-devel. Try it again that way, I hope it works! Sincerely, José Enrique — Reply to this email directly, view it on GitHub <#17 (comment)>, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBRW6L5AEGUEGILM5I43P5TXSOELTANCNFSM6AAAAAAV2OQIXU . You are receiving this because you were mentioned.Message ID: @.>

Hi Elvy,

I have no idea what could be happening... First of all, I think that all you have to type is library(erah), but I think it's already loaded after installing it:

* DONE (erah)> library(erah)
      _____        _
     |  __ \      | |        eRah R package:
  ___| |__) | __ _| |__      ----------------
 / _ \  _   // _` |  _ \     Untargeted GC-MS metabolomics profiling
|  __/ |  \ \ (_| | | | |
 \___|_|   \_\__,_|_| |_|    Version 2.0.0

About the issues, can you try it with other samples? Maybe it's because of the files... But I don't know to be honest.

Sincerely,

José Enrique

star1220-max commented 1 year ago

Love from China, I had the same problem, thanks for your answer, my problem has been solved.