The vignette has been updated to include the new package features. The gcspikelite data set is now used as the example mainly as this allows much simpler and quicker access to the test data than the user having to download the example files from MetaboLights. This also allows the majority of the vignette code to be evaluated upon rendering ensuring code robustness with future changes. The new file input system using only the file paths is now included but the original directory system is still covered. Also parallel processing for deconvoleComp() is explained.
The progress bar for alignComp() and recMissComp() now uses the progress bar from the progress package that allows an eta time to be displayed as well as it appearing as a message that reduces output within the vignette.
An error in expClasses() has been fixed when the class column is not a factor within the phenotype table. Also an error in plotProfile() when per.class = TRUE has been fixed.
Lastly the sample IDs are now correctly displayed in the tables returned by dataList() and alignList() and these functions as well as idList() now return tibbles.
The vignette has been updated to include the new package features. The
gcspikelitedata set is now used as the example mainly as this allows much simpler and quicker access to the test data than the user having to download the example files from MetaboLights. This also allows the majority of the vignette code to be evaluated upon rendering ensuring code robustness with future changes. The new file input system using only the file paths is now included but the original directory system is still covered. Also parallel processing fordeconvoleComp()is explained.The progress bar for
alignComp()andrecMissComp()now uses the progress bar from theprogresspackage that allows an eta time to be displayed as well as it appearing as a message that reduces output within the vignette.An error in
expClasses()has been fixed when the class column is not a factor within the phenotype table. Also an error inplotProfile()whenper.class = TRUEhas been fixed.Lastly the sample IDs are now correctly displayed in the tables returned by
dataList()andalignList()and these functions as well asidList()now return tibbles.