When attempting to align (with the alignComp function) a set of 100 chromatograms ( ~19MB/chromatogram [14MB-31MB] ), after deconvolution and selecting a suitable block.size parameter the following happens:
All the blocks align successfully to 100% but when the final step reaches 100% (Aligning factors into blocks...) the following error occurs: Error in matrix(0, nrow = length(x$ID)) : data is too long
block.size=19 on my 16GB RAM laptop running under Ubuntu 19.04 is the largest I can go before getting memory allocation errors (lower than normally expected?).
The alignment parameters used are the following:
When attempting to align (with the
alignComp
function) a set of 100 chromatograms ( ~19MB/chromatogram [14MB-31MB] ), after deconvolution and selecting a suitableblock.size
parameter the following happens:All the blocks align successfully to 100% but when the final step reaches 100% (
Aligning factors into blocks...
) the following error occurs:Error in matrix(0, nrow = length(x$ID)) : data is too long
block.size=19
on my 16GB RAM laptop running under Ubuntu 19.04 is the largest I can go before getting memory allocation errors (lower than normally expected?). The alignment parameters used are the following:The output of the
traceback()
function: