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xenon-middleware / xenon-cli

Perform files and jobs operations with Xenon library from command line
http://nlesc.github.io/Xenon/
Apache License 2.0
2 stars 3 forks source link

Build failed with an exception: Unsupported major.minor version 52.0 #48

Closed arnikz closed 6 years ago

arnikz commented 6 years ago

Hi, I've tried to build on CentOS (release 7.4) but got the following:

$ git clone https://github.com/NLeSC/xenon-cli.git
$ cd xenon-cli
$ ./gradlew build

FAILURE: Build failed with an exception.

* What went wrong:
java.lang.UnsupportedClassVersionError: org/sonarqube/gradle/SonarQubePlugin : Unsupported major.minor version 52.0
> org/sonarqube/gradle/SonarQubePlugin : Unsupported major.minor version 52.0

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 5.0.
See https://docs.gradle.org/4.5/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 1s
sverhoeven commented 6 years ago

The Java version Xenon-cli expects is 1.8. You are using a different Java version.

I added a check that will throw error when wrong java version is used.

arnikz commented 6 years ago

OK, I can install/update locally but not system-wide on the HPC cluster used.

jmaassen commented 6 years ago

With java that should not be a problem. Just unzip a JDK installation somewhere in your homedir, and make sure the JAVA_HOME environment variable is set to that path, and PATH=$JAVA_HOME/bin:$PATH. Don't forget that the nodes also need this, so it should probably go in your .bashrc.

arnikz commented 6 years ago

Ideally, I would like to have a "smooth" deployment (i.e. assume nothing on a target system). So, I wouldn't like to do any of the above:) Currently, my workflow follows this in practice using conda env. I've just checked, the program we tested in the workflow depends on OpenJDK 8, so adding yet another dependency, xenon-cli (via NLeSC conda channel?) to my config file would be really nice!

jmaassen commented 6 years ago

That's a very nice idea! We put stuff conda in a previous project, but I'm not sure if we have an NLeSC channel already.

jmaassen commented 6 years ago

Yes we do:

https://anaconda.org/nlesc

arnikz commented 6 years ago

That's great! Let's make a conda package for xenon-cli. In the meantime, I'll proceed with the (manual) installation & testing. Also, I will open a new issue (#49) concerning this and tag it with future enhancement.

arnikz commented 6 years ago

@sverhoeven: I've the binaries (using OpenJDK 8) but several tests failed during the build (related to #47):

32 tests completed, 5 failed

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':integrationTest'.
> There were failing tests. See the report at: file:///home/cog/akuzniar/xenon-cli/build/reports/tests/integrationTest/index.html

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 5.0.
See https://docs.gradle.org/4.5/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 46s
16 actionable tasks: 16 executed
sverhoeven commented 6 years ago

Can you look up the tests that have failed in file:///home/cog/akuzniar/xenon-cli/build/reports/tests/integrationTest/index.html and can you show me the xml files (build/test-results/integrationTest/*.xml) of those 5 failed tests.

arnikz commented 6 years ago

See the report and the contents of the *.xml files:

Class | Tests | Failures | Ignored | Duration | Success rate
...
nl.esciencecenter.xenon.cli.SftpTest | 1 | 1 | 0 | 0s | 0%
nl.esciencecenter.xenon.cli.SlurmTest | 1 | 1 | 0 | 0s | 0%
nl.esciencecenter.xenon.cli.SshTest | 1 | 1 | 0 | 0s | 0%
...
nl.esciencecenter.xenon.cli.sftp.CopyInputTest | 1 | 1 | 0 | 0s | 0%
nl.esciencecenter.xenon.cli.sftp.SftpCopyTest | 1 | 1 | 0 | 0s | 0%
<?xml version="1.0" encoding="UTF-8"?>
<testsuite name="nl.esciencecenter.xenon.cli.SftpTest" tests="1" skipped="0" failures="1" errors="0" timestamp="2018-01-30T10:43:43" hostname="hpcs03.op.umcutrecht.nl" time="0.0">
  <properties/>
  <testcase name="classMethod" classname="nl.esciencecenter.xenon.cli.SftpTest" time="0.0">
    <failure message="java.lang.ExceptionInInitializerError" type="java.lang.ExceptionInInitializerError">java.lang.ExceptionInInitializerError
    at sun.misc.Unsafe.ensureClassInitialized(Native Method)
    at sun.reflect.UnsafeFieldAccessorFactory.newFieldAccessor(UnsafeFieldAccessorFactory.java:43)
    at sun.reflect.ReflectionFactory.newFieldAccessor(ReflectionFactory.java:142)
    at java.lang.reflect.Field.acquireFieldAccessor(Field.java:1088)
    at java.lang.reflect.Field.getFieldAccessor(Field.java:1069)
    at java.lang.reflect.Field.get(Field.java:393)
    at org.junit.runners.model.FrameworkField.get(FrameworkField.java:73)
    at org.junit.runners.model.TestClass.getAnnotatedFieldValues(TestClass.java:230)
    at org.junit.runners.ParentRunner.classRules(ParentRunner.java:255)
    at org.junit.runners.ParentRunner.withClassRules(ParentRunner.java:244)
    at org.junit.runners.ParentRunner.classBlock(ParentRunner.java:194)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:362)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66)
    at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)
    at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)
    at com.sun.proxy.$Proxy1.processTestClass(Unknown Source)
    at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:108)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128)
    at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404)
    at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
    at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalStateException: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:64)
    at com.github.geowarin.junit.DockerRuleBuilder.build(DockerRuleBuilder.java:87)
    at nl.esciencecenter.xenon.cli.SftpTest.&lt;clinit&gt;(SftpTest.java:31)
    ... 41 more
Caused by: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.spotify.docker.client.DefaultDockerClient.propagate(DefaultDockerClient.java:2699)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2630)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1247)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1224)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1218)
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:60)
    ... 43 more
Caused by: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.getValue(AbstractFuture.java:299)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.get(AbstractFuture.java:286)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture.get(AbstractFuture.java:116)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2628)
    ... 47 more
Caused by: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:481)
    at org.glassfish.jersey.apache.connector.ApacheConnector$1.run(ApacheConnector.java:491)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at jersey.repackaged.com.google.common.util.concurrent.MoreExecutors$DirectExecutorService.execute(MoreExecutors.java:299)
    at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:50)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:37)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:487)
    at org.glassfish.jersey.client.ClientRuntime$2.run(ClientRuntime.java:178)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:340)
    at org.glassfish.jersey.client.ClientRuntime$3.run(ClientRuntime.java:210)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    ... 1 more
Caused by: java.io.IOException: No such file or directory
    at jnr.unixsocket.UnixSocketChannel.doConnect(UnixSocketChannel.java:94)
    at jnr.unixsocket.UnixSocketChannel.connect(UnixSocketChannel.java:102)
    at com.spotify.docker.client.ApacheUnixSocket.connect(ApacheUnixSocket.java:76)
    at com.spotify.docker.client.UnixConnectionSocketFactory.connectSocket(UnixConnectionSocketFactory.java:78)
    at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:134)
    at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
    at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
    at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
    at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
    at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
    at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
    at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
    at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:71)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:435)
    ... 21 more
</failure>
  </testcase>
  <system-out><![CDATA[]]></system-out>
  <system-err><![CDATA[Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
]]></system-err>
</testsuite>
<?xml version="1.0" encoding="UTF-8"?>
<testsuite name="nl.esciencecenter.xenon.cli.SlurmTest" tests="1" skipped="0" failures="1" errors="0" timestamp="2018-01-30T10:43:43" hostname="hpcs03.op.umcutrecht.nl" time="0.0">
  <properties/>
  <testcase name="classMethod" classname="nl.esciencecenter.xenon.cli.SlurmTest" time="0.0">
    <failure message="java.lang.ExceptionInInitializerError" type="java.lang.ExceptionInInitializerError">java.lang.ExceptionInInitializerError
    at sun.misc.Unsafe.ensureClassInitialized(Native Method)
    at sun.reflect.UnsafeFieldAccessorFactory.newFieldAccessor(UnsafeFieldAccessorFactory.java:43)
    at sun.reflect.ReflectionFactory.newFieldAccessor(ReflectionFactory.java:142)
    at java.lang.reflect.Field.acquireFieldAccessor(Field.java:1088)
    at java.lang.reflect.Field.getFieldAccessor(Field.java:1069)
    at java.lang.reflect.Field.get(Field.java:393)
    at org.junit.runners.model.FrameworkField.get(FrameworkField.java:73)
    at org.junit.runners.model.TestClass.getAnnotatedFieldValues(TestClass.java:230)
    at org.junit.runners.ParentRunner.classRules(ParentRunner.java:255)
    at org.junit.runners.ParentRunner.withClassRules(ParentRunner.java:244)
    at org.junit.runners.ParentRunner.classBlock(ParentRunner.java:194)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:362)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66)
    at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)
    at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)
    at com.sun.proxy.$Proxy1.processTestClass(Unknown Source)
    at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:108)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128)
    at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404)
    at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
    at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalStateException: Could not find docker-compose, looked in: DockerCommandLocations{possiblePaths=[null, /usr/local/bin/docker-compose, /usr/bin/docker-compose]}
    at com.palantir.docker.compose.execution.DockerComposeExecutable.lambda$defaultDockerComposePath$28(DockerComposeExecutable.java:40)
    at java.util.Optional.orElseThrow(Optional.java:290)
    at com.palantir.docker.compose.execution.DockerComposeExecutable.defaultDockerComposePath(DockerComposeExecutable.java:40)
    at com.palantir.docker.compose.execution.DockerComposeExecutable.dockerComposePath(DockerComposeExecutable.java:84)
    at com.palantir.docker.compose.execution.ImmutableDockerComposeExecutable.access$501(ImmutableDockerComposeExecutable.java:22)
    at com.palantir.docker.compose.execution.ImmutableDockerComposeExecutable$InitShim.dockerComposePath(ImmutableDockerComposeExecutable.java:92)
    at com.palantir.docker.compose.execution.ImmutableDockerComposeExecutable.&lt;init&gt;(ImmutableDockerComposeExecutable.java:46)
    at com.palantir.docker.compose.execution.ImmutableDockerComposeExecutable.&lt;init&gt;(ImmutableDockerComposeExecutable.java:22)
    at com.palantir.docker.compose.execution.ImmutableDockerComposeExecutable$Builder.build(ImmutableDockerComposeExecutable.java:337)
    at com.palantir.docker.compose.DockerComposeRule.dockerComposeExecutable(DockerComposeRule.java:77)
    at com.palantir.docker.compose.ImmutableDockerComposeRule.access$3101(ImmutableDockerComposeRule.java:32)
    at com.palantir.docker.compose.ImmutableDockerComposeRule$InitShim.dockerComposeExecutable(ImmutableDockerComposeRule.java:188)
    at com.palantir.docker.compose.ImmutableDockerComposeRule.&lt;init&gt;(ImmutableDockerComposeRule.java:93)
    at com.palantir.docker.compose.ImmutableDockerComposeRule.&lt;init&gt;(ImmutableDockerComposeRule.java:32)
    at com.palantir.docker.compose.ImmutableDockerComposeRule$Builder.build(ImmutableDockerComposeRule.java:1352)
    at nl.esciencecenter.xenon.cli.SlurmTest.&lt;clinit&gt;(SlurmTest.java:27)
    ... 41 more
</failure>
  </testcase>
  <system-out><![CDATA[]]></system-out>
  <system-err><![CDATA[]]></system-err>
</testsuite>
<?xml version="1.0" encoding="UTF-8"?>
<testsuite name="nl.esciencecenter.xenon.cli.SshTest" tests="1" skipped="0" failures="1" errors="0" timestamp="2018-01-30T10:43:42" hostname="hpcs03.op.umcutrecht.nl" time="0.0">
  <properties/>
  <testcase name="classMethod" classname="nl.esciencecenter.xenon.cli.SshTest" time="0.0">
    <failure message="java.lang.ExceptionInInitializerError" type="java.lang.ExceptionInInitializerError">java.lang.ExceptionInInitializerError
    at sun.misc.Unsafe.ensureClassInitialized(Native Method)
    at sun.reflect.UnsafeFieldAccessorFactory.newFieldAccessor(UnsafeFieldAccessorFactory.java:43)
    at sun.reflect.ReflectionFactory.newFieldAccessor(ReflectionFactory.java:142)
    at java.lang.reflect.Field.acquireFieldAccessor(Field.java:1088)
    at java.lang.reflect.Field.getFieldAccessor(Field.java:1069)
    at java.lang.reflect.Field.get(Field.java:393)
    at org.junit.runners.model.FrameworkField.get(FrameworkField.java:73)
    at org.junit.runners.model.TestClass.getAnnotatedFieldValues(TestClass.java:230)
    at org.junit.runners.ParentRunner.classRules(ParentRunner.java:255)
    at org.junit.runners.ParentRunner.withClassRules(ParentRunner.java:244)
    at org.junit.runners.ParentRunner.classBlock(ParentRunner.java:194)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:362)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66)
    at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)
    at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)
    at com.sun.proxy.$Proxy1.processTestClass(Unknown Source)
    at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:108)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128)
    at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404)
    at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
    at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalStateException: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:64)
    at com.github.geowarin.junit.DockerRuleBuilder.build(DockerRuleBuilder.java:87)
    at nl.esciencecenter.xenon.cli.SshTest.&lt;clinit&gt;(SshTest.java:22)
    ... 41 more
Caused by: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.spotify.docker.client.DefaultDockerClient.propagate(DefaultDockerClient.java:2699)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2630)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1247)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1224)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1218)
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:60)
    ... 43 more
Caused by: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.getValue(AbstractFuture.java:299)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.get(AbstractFuture.java:286)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture.get(AbstractFuture.java:116)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2628)
    ... 47 more
Caused by: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:481)
    at org.glassfish.jersey.apache.connector.ApacheConnector$1.run(ApacheConnector.java:491)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at jersey.repackaged.com.google.common.util.concurrent.MoreExecutors$DirectExecutorService.execute(MoreExecutors.java:299)
    at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:50)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:37)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:487)
    at org.glassfish.jersey.client.ClientRuntime$2.run(ClientRuntime.java:178)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:340)
    at org.glassfish.jersey.client.ClientRuntime$3.run(ClientRuntime.java:210)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    ... 1 more
Caused by: java.io.IOException: No such file or directory
    at jnr.unixsocket.UnixSocketChannel.doConnect(UnixSocketChannel.java:94)
    at jnr.unixsocket.UnixSocketChannel.connect(UnixSocketChannel.java:102)
    at com.spotify.docker.client.ApacheUnixSocket.connect(ApacheUnixSocket.java:76)
    at com.spotify.docker.client.UnixConnectionSocketFactory.connectSocket(UnixConnectionSocketFactory.java:78)
    at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:134)
    at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
    at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
    at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
    at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
    at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
    at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
    at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
    at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:71)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:435)
    ... 21 more
</failure>
  </testcase>
  <system-out><![CDATA[11:43:41.324 [Test worker] DEBUG com.spotify.docker.client.DockerCertificates - /home/cog/akuzniar/.docker/ca.pem, /home/cog/akuzniar/.docker/key.pem or /home/cog/akuzniar/.docker/cert.pem does not exist, not using SSL
11:43:41.638 [Test worker] DEBUG com.spotify.docker.client.DockerConfigReader - Using configfile: /home/cog/akuzniar/.dockercfg 
]]></system-out>
  <system-err><![CDATA[Jan 30, 2018 11:43:42 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:42 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:42 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:42 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:42 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:42 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
]]></system-err>
</testsuite>
<?xml version="1.0" encoding="UTF-8"?>
<testsuite name="nl.esciencecenter.xenon.cli.sftp.CopyInputTest" tests="1" skipped="0" failures="1" errors="0" timestamp="2018-01-30T10:43:43" hostname="hpcs03.op.umcutrecht.nl" time="0.0">
  <properties/>
  <testcase name="classMethod" classname="nl.esciencecenter.xenon.cli.sftp.CopyInputTest" time="0.0">
    <failure message="java.lang.ExceptionInInitializerError" type="java.lang.ExceptionInInitializerError">java.lang.ExceptionInInitializerError
    at sun.misc.Unsafe.ensureClassInitialized(Native Method)
    at sun.reflect.UnsafeFieldAccessorFactory.newFieldAccessor(UnsafeFieldAccessorFactory.java:43)
    at sun.reflect.ReflectionFactory.newFieldAccessor(ReflectionFactory.java:142)
    at java.lang.reflect.Field.acquireFieldAccessor(Field.java:1088)
    at java.lang.reflect.Field.getFieldAccessor(Field.java:1069)
    at java.lang.reflect.Field.get(Field.java:393)
    at org.junit.runners.model.FrameworkField.get(FrameworkField.java:73)
    at org.junit.runners.model.TestClass.getAnnotatedFieldValues(TestClass.java:230)
    at org.junit.runners.ParentRunner.classRules(ParentRunner.java:255)
    at org.junit.runners.ParentRunner.withClassRules(ParentRunner.java:244)
    at org.junit.runners.ParentRunner.classBlock(ParentRunner.java:194)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:362)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66)
    at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)
    at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)
    at com.sun.proxy.$Proxy1.processTestClass(Unknown Source)
    at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:108)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128)
    at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404)
    at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
    at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalStateException: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:64)
    at com.github.geowarin.junit.DockerRuleBuilder.build(DockerRuleBuilder.java:87)
    at nl.esciencecenter.xenon.cli.sftp.CopyInputTest.&lt;clinit&gt;(CopyInputTest.java:23)
    ... 41 more
Caused by: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.spotify.docker.client.DefaultDockerClient.propagate(DefaultDockerClient.java:2699)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2630)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1247)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1224)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1218)
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:60)
    ... 43 more
Caused by: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.getValue(AbstractFuture.java:299)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.get(AbstractFuture.java:286)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture.get(AbstractFuture.java:116)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2628)
    ... 47 more
Caused by: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:481)
    at org.glassfish.jersey.apache.connector.ApacheConnector$1.run(ApacheConnector.java:491)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at jersey.repackaged.com.google.common.util.concurrent.MoreExecutors$DirectExecutorService.execute(MoreExecutors.java:299)
    at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:50)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:37)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:487)
    at org.glassfish.jersey.client.ClientRuntime$2.run(ClientRuntime.java:178)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:340)
    at org.glassfish.jersey.client.ClientRuntime$3.run(ClientRuntime.java:210)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    ... 1 more
Caused by: java.io.IOException: No such file or directory
    at jnr.unixsocket.UnixSocketChannel.doConnect(UnixSocketChannel.java:94)
    at jnr.unixsocket.UnixSocketChannel.connect(UnixSocketChannel.java:102)
    at com.spotify.docker.client.ApacheUnixSocket.connect(ApacheUnixSocket.java:76)
    at com.spotify.docker.client.UnixConnectionSocketFactory.connectSocket(UnixConnectionSocketFactory.java:78)
    at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:134)
    at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
    at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
    at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
    at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
    at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
    at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
    at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
    at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:71)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:435)
    ... 21 more
</failure>
  </testcase>
  <system-out><![CDATA[]]></system-out>
  <system-err><![CDATA[Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
]]></system-err>
</testsuite>
<?xml version="1.0" encoding="UTF-8"?>
<testsuite name="nl.esciencecenter.xenon.cli.sftp.SftpCopyTest" tests="1" skipped="0" failures="1" errors="0" timestamp="2018-01-30T10:43:43" hostname="hpcs03.op.umcutrecht.nl" time="0.0">
  <properties/>
  <testcase name="classMethod" classname="nl.esciencecenter.xenon.cli.sftp.SftpCopyTest" time="0.0">
    <failure message="java.lang.ExceptionInInitializerError" type="java.lang.ExceptionInInitializerError">java.lang.ExceptionInInitializerError
    at sun.misc.Unsafe.ensureClassInitialized(Native Method)
    at sun.reflect.UnsafeFieldAccessorFactory.newFieldAccessor(UnsafeFieldAccessorFactory.java:43)
    at sun.reflect.ReflectionFactory.newFieldAccessor(ReflectionFactory.java:142)
    at java.lang.reflect.Field.acquireFieldAccessor(Field.java:1088)
    at java.lang.reflect.Field.getFieldAccessor(Field.java:1069)
    at java.lang.reflect.Field.get(Field.java:393)
    at org.junit.runners.model.FrameworkField.get(FrameworkField.java:73)
    at org.junit.runners.model.TestClass.getAnnotatedFieldValues(TestClass.java:230)
    at org.junit.runners.ParentRunner.classRules(ParentRunner.java:255)
    at org.junit.runners.ParentRunner.withClassRules(ParentRunner.java:244)
    at org.junit.runners.ParentRunner.classBlock(ParentRunner.java:194)
    at org.junit.runners.ParentRunner.run(ParentRunner.java:362)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.runTestClass(JUnitTestClassExecuter.java:114)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassExecuter.execute(JUnitTestClassExecuter.java:57)
    at org.gradle.api.internal.tasks.testing.junit.JUnitTestClassProcessor.processTestClass(JUnitTestClassProcessor.java:66)
    at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.processTestClass(SuiteTestClassProcessor.java:51)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:32)
    at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:93)
    at com.sun.proxy.$Proxy1.processTestClass(Unknown Source)
    at org.gradle.api.internal.tasks.testing.worker.TestWorker.processTestClass(TestWorker.java:108)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:35)
    at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:146)
    at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:128)
    at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:404)
    at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
    at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
    at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.IllegalStateException: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:64)
    at com.github.geowarin.junit.DockerRuleBuilder.build(DockerRuleBuilder.java:87)
    at nl.esciencecenter.xenon.cli.sftp.SftpCopyTest.&lt;clinit&gt;(SftpCopyTest.java:27)
    ... 41 more
Caused by: com.spotify.docker.client.exceptions.DockerException: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at com.spotify.docker.client.DefaultDockerClient.propagate(DefaultDockerClient.java:2699)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2630)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1247)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1224)
    at com.spotify.docker.client.DefaultDockerClient.pull(DefaultDockerClient.java:1218)
    at com.github.geowarin.junit.DockerRule.&lt;init&gt;(DockerRule.java:60)
    ... 43 more
Caused by: java.util.concurrent.ExecutionException: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.getValue(AbstractFuture.java:299)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture$Sync.get(AbstractFuture.java:286)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractFuture.get(AbstractFuture.java:116)
    at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2628)
    ... 47 more
Caused by: javax.ws.rs.ProcessingException: java.io.IOException: No such file or directory
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:481)
    at org.glassfish.jersey.apache.connector.ApacheConnector$1.run(ApacheConnector.java:491)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at jersey.repackaged.com.google.common.util.concurrent.MoreExecutors$DirectExecutorService.execute(MoreExecutors.java:299)
    at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:50)
    at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:37)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:487)
    at org.glassfish.jersey.client.ClientRuntime$2.run(ClientRuntime.java:178)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)
    at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:315)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:297)
    at org.glassfish.jersey.internal.Errors.process(Errors.java:267)
    at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:340)
    at org.glassfish.jersey.client.ClientRuntime$3.run(ClientRuntime.java:210)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    ... 1 more
Caused by: java.io.IOException: No such file or directory
    at jnr.unixsocket.UnixSocketChannel.doConnect(UnixSocketChannel.java:94)
    at jnr.unixsocket.UnixSocketChannel.connect(UnixSocketChannel.java:102)
    at com.spotify.docker.client.ApacheUnixSocket.connect(ApacheUnixSocket.java:76)
    at com.spotify.docker.client.UnixConnectionSocketFactory.connectSocket(UnixConnectionSocketFactory.java:78)
    at org.apache.http.impl.conn.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:134)
    at org.apache.http.impl.conn.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:353)
    at org.apache.http.impl.execchain.MainClientExec.establishRoute(MainClientExec.java:380)
    at org.apache.http.impl.execchain.MainClientExec.execute(MainClientExec.java:236)
    at org.apache.http.impl.execchain.ProtocolExec.execute(ProtocolExec.java:184)
    at org.apache.http.impl.execchain.RetryExec.execute(RetryExec.java:88)
    at org.apache.http.impl.execchain.RedirectExec.execute(RedirectExec.java:110)
    at org.apache.http.impl.client.InternalHttpClient.doExecute(InternalHttpClient.java:184)
    at org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:71)
    at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:435)
    ... 21 more
</failure>
  </testcase>
  <system-out><![CDATA[]]></system-out>
  <system-err><![CDATA[Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: I/O exception (java.io.IOException) caught when processing request to {}->unix://localhost:80: No such file or directory
Jan 30, 2018 11:43:43 AM org.apache.http.impl.execchain.RetryExec execute
INFO: Retrying request to {}->unix://localhost:80
]]></system-err>
</testsuite>
sverhoeven commented 6 years ago

You have 2 problems:

  1. docker-compose is not in the PATH
  2. The tests are not able to connect to the docker socket (/var/run/docker.sock)

You need to install docker-compose see https://docs.docker.com/compose/install/ Do you have docker installed and running? Check by running docker version.

jmaassen commented 6 years ago

Just a quick question:

What is the reason not to simply install the xenon-cli as is ? A binary distribution I mean ?

There whole test setup is complex and requires things like docker and docker-compose to be setup properly. But as a user of xenon-cli (or xenon for that matter) there is no reason to do this all yourself, you just want the install the end product and skip all the compilation and testing, as we have done that for you already...

Or am I missing something ?

arnikz commented 6 years ago

You are right. However, the latest xenon-cli release still uses xenon v2.2.0 (v2.3.0 fixes most of the issues I've had).

arnikz commented 6 years ago

@sverhoeven: My docker-compose installation was not right but fixed it and the build (incl. tests) worked!