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xenon-middleware / xenon-cli

Perform files and jobs operations with Xenon library from command line
http://nlesc.github.io/Xenon/
Apache License 2.0
2 stars 3 forks source link

Add option to request tmp space #61

Closed arnikz closed 5 years ago

arnikz commented 6 years ago

For my batch jobs I need to set the tmp space (in MB): SGE: -l tmpspace=...M SLURM: --tmp=... (MB)

For time being, I can use the --scheduler-argument option.

jmaassen commented 6 years ago

I've added support in JobDescription of Xenon.Still need to run integration tests

arnikz commented 5 years ago

@sverhoeven is this implemented in the 3.0.0.a-dev4? The option does not seem to be exposed via CLI:

xenon scheduler gridengine --location local:// submit -h
usage: xenon scheduler gridengine --location LOCATION submit [-h]
             [--queue QUEUE] [--env KEY=VAL] [--inherit-env]
             [--option KEY=VAL] [--max-run-time MAX_RUN_TIME]
             [--node-count NODE_COUNT] [--procs-per-node PROCS_PER_NODE]
             [--start-single-process]
             [--working-directory WORKING_DIRECTORY]
             [--max-memory MAX_MEMORY]
             [--scheduler-argument SCHEDULER_ARGUMENTS] [--stdin STDIN]
             [--stdout STDOUT] [--stderr STDERR] [--long] [--name NAME]
             executable [args [args ...]]
sverhoeven commented 5 years ago

Uploaded version 3.0.0a.dev5 to conda. It includes a temp space option.