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xf-omics / SHINE

prediction of pathogenicity for inframe indels
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How to execute prediction scripts correctly and sequentially #5

Open lqr131115 opened 1 year ago

lqr131115 commented 1 year ago

The readme is a bit difficult for me to understand. If I want to make a prediction on the following data and get a result, what steps should I do and what script should I execute? Suppose these data are saved in a file named test.txt

1   99306124    CT  CAGAA
1   153934826   GCTG    G
1   154501624   TT  TCACC
xf-omics commented 1 year ago

Insertions and deletions have different prediction models. For deletions, I suggest you using the pre-computed prediction scores https://www.dropbox.com/s/el38y6nkdrnhn56/SHINE_deletion_scores.tar.gz?dl=0 For insertions, did you try the example code here https://github.com/xf-omics/SHINE/tree/main/example Does it work for you?