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xfengnefx / hifiasm-meta

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
MIT License
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A serious error in simulated data #16

Closed ruoyu1123 closed 2 years ago

ruoyu1123 commented 2 years ago

[ stack smashing detected ]

When a data set have a high coverage, the error maybe appear. The software for simulation is pbsim2.

xfengnefx commented 2 years ago

What's the target coverage? Could you post the log file (stderr)? I wonder where did this stack smashing happen..

Also for pbsim2, I think its default settings does not simulate hifi reads, is that correct?

ruoyu1123 commented 2 years ago

What's the target coverage? Could you post the log file (stderr)? I wonder where did this stack smashing happen..

Also for pbsim2, I think its default settings does not simulate hifi reads, is that correct? Sorry, It is my careless. There are many letter outside of [ATCG] in reference of simulation , such as Z, Y, H and so on. So，the program had this error. Now, the problem have been solved. Thank you.