CRAN checks fail when building vignettes

brianstock commented 3 years ago

Hello,

I've used ggmcmc to output diagnostics in a package (MixSIAR), and received the following email from CRAN. Are you planning on keeping ggmcmc on CRAN? If not, it would be nice to know before 2021-02-12 so I can remove the ggmcmc dependency from MixSIAR.

Thanks, Brian

This concerns the CRAN packages

BayesMallows MixSIAR PLMIX ggmcmc missingHE

maintained by one of you:

Andrea Gabrio ucakgab@ucl.ac.uk: missingHE Brian Stock bstock09@gmail.com: MixSIAR Cristina Mollica cristina.mollica@uniroma1.it: PLMIX Oystein Sorensen oystein.sorensen.1985@gmail.com: BayesMallows Xavier Fernández i Marín xavier.fim@gmail.com: ggmcmc

We have asked for an update fixing the check problems shown at https://cran.r-project.org/web/checks/check_results_ggmcmc.html with no update from the maintainer thus far.

Thus, package ggmcmc is now scheduled for archival on 2021-02-12, and archiving this will necessitate also archiving its strong reverse dependencies.

Please negotiate the necessary actions.

It seems the warnings/errors are thrown when building v70i09.Rnw, possibly with the use of data_frame() and/or cairo_pdf().

Warning: `data_frame()` is deprecated as of tibble 1.1.0.
    Please use `tibble()` instead.

But from your last commit message it seems like you're already aware of this...

Error: processing vignette 'v70i09.Rnw' failed with diagnostics:
    Running ‘texi2dvi’ on ‘v70i09.tex’ failed.
    LaTeX errors:
    ! Undefined control sequence.
    <recently read> \Hy@colorlink

    l.109 \begin{document}

    ! Undefined control sequence.
    \close@pdflink ->\Hy@endcolorlink
     \Hy@VerboseLinkStop \pdfendlink

--- re-building ‘v70i09.Rnw’ using knitr
Warning: The device 'cairo_pdf' is not operational; falling back to 'pdf'.

xfim commented 3 years ago

Yes, yes of course @brianstock . I am working on it.

xfim commented 3 years ago

Done. Sorry @brianstock it took a while, for a really minimal change. But knowing where it was the key, and also adapting to the new requirements of the M1mac architecture.

Thank you for your support.

ggmcmc-1.5.1.1 is in CRAN.

brianstock commented 3 years ago

Great news! Thanks for handling this. I know the maintenance takes a frustrating amount of time... MixSIAR got booted from CRAN briefly in the past because I didn't fix a minor issue soon enough.

xfim / ggmcmc

CRAN checks fail when building vignettes #72