xflouris libpll-2 issues

xflouris / libpll-2

Phylogenetic Likelihood Library 2 - experimental

GNU Affero General Public License v3.0

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issues

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docs: update compilation instructions in `README.md` to `libpll-2` (from `libpll`)

#24 dlaehnemann closed 1 year ago
0
build not working with bison `3.8` (solved: use bison `3.8.2`)

#23 dlaehnemann closed 1 year ago
9
Deprecated/non-POSIX bison/yacc directives

#22 jdx-gh closed 1 year ago
1
A few missing exports in libpll

#21 jdx-gh closed 1 year ago
1
Changed the site weights to use doubles

#20 computations opened 3 years ago
0
CLV Management / Saving mode

#19 pierrebarbera opened 3 years ago
7
compute parsimony branch lengths

#18 willfischer opened 4 years ago
16
Packaging libpll-2 for Debian Med

#17 shayandoust opened 4 years ago
15
Fixes links and formatting to work in github's markdown

#16 computations closed 4 years ago
0
Fixes a typo, adds a missing image

#15 computations closed 4 years ago
0
adds a first draft of some documentation for the common datastructures

#14 computations closed 4 years ago
0
adds error handling for unifurcations in newick parsed newick strings

#13 computations closed 5 years ago
0
added a mask constant for the attributes

#12 computations closed 5 years ago
0
Adding documentation and visualization script for benchmarking

#11 RCBiczok closed 5 years ago
0
Implemented a "chunked" method of traversing the tree

#10 computations closed 5 years ago
0
Added a 'j' ambiguous character to pll_map_aa

#9 computations closed 5 years ago
1
amino acid j char

#8 computations closed 5 years ago
0
Implemented CLV reuse algorithm

#7 aggelosk opened 5 years ago
0
pll_utree_unroot returns a virtual root that is inconsistent with the expected traversal order

#6 pierrebarbera opened 5 years ago
0
Sanaddr

#5 computations opened 5 years ago
1
Add more AVX512 kernels and AVX 512 / AVX2 kernels with alternative memory layout

#4 RCBiczok closed 5 years ago
0
fixed signedness errors in compress.c

#3 computations closed 5 years ago
0
Cmake build

#2 david-parsons closed 6 years ago
0
Experimental AVX512F kernels (protein data only)

#1 RCBiczok opened 6 years ago
0