Missing digits in WAG rate matrix

xflouris / libpll

Phylogenetic Likelihood Library

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Open bredelings opened 5 years ago

bredelings commented 5 years ago

Hi,

The WAG rate matrix in libpll is different from the WAG matrix that you can download here: https://www.ebi.ac.uk/goldman-srv/WAG/wag.dat

This is causing raxml-ng to fail some likelihood tests.

There are further details and discussion in my message to the testiphy list here: https://groups.google.com/d/msg/testiphy/wkpvzHVrnDs/L6FOB_HQAwAJ

-BenRI

amkozlov commented 5 years ago

@bredelings : many thanks for reporting! I just fixed it in the libpll branch which is used in raxml-ng:

@xflouris: shall we also fix it here (in libpll-1)?