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xflouris / libpll

Phylogenetic Likelihood Library
GNU Affero General Public License v3.0
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Implement and benchmark per-category scalers #80

Closed amkozlov closed 7 years ago

amkozlov commented 8 years ago
  1. Implement per rate category scalers as described in https://github.com/xflouris/libpll/issues/44
  2. Test performance impact (measure slowdown compared to existing per-site scalers)
amkozlov commented 7 years ago
  1. implemented
  2. Per-rate scalers are up to 20-30% slower than per-site scalers. Further optimization is possible though.