PLL_ATTRIB_ARCH_AVX fails when number of states is different than 4, and invariant sites are used in a second evaluation of log-likelihood.
PLL_ATTRIB_ARCH_CPU and PLL_ATTRIB_PATTERN_TIP with any combination of AVX or CPU work fine. The problem appears only if AVX is used without tip pattern lookups.
The error can be reproduced in the unrooted example by changing states (e.g. to 5) and extending the subst_params array (e.g. to 10 ones).
xflouris
commented
8 years ago
PLL_ATTRIB_ARCH_AVXfails when number of states is different than 4, and invariant sites are used in a second evaluation of log-likelihood.PLL_ATTRIB_ARCH_CPUandPLL_ATTRIB_PATTERN_TIPwith any combination of AVX or CPU work fine. The problem appears only if AVX is used without tip pattern lookups.The error can be reproduced in the unrooted example by changing states (e.g. to 5) and extending the subst_params array (e.g. to 10 ones).