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xflouris
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salt
Sequence Analysis Library and Toolkit
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Implement a striped vectorized version of Needleman-Wunsch-Gotoh for 16-bit values
#16
xflouris
opened
9 years ago
0
Implement FASTQ handling
#15
xflouris
opened
9 years ago
0
Separate salt.c from the library and make it a toolkit
#14
xflouris
opened
10 years ago
0
Autotools configuration
#13
xflouris
opened
10 years ago
0
Implement an SSE3 vectorized version of prefix suffix matching with 8-bit scores for all 16 bases
#12
xflouris
opened
10 years ago
0
code cleanup
#11
xflouris
closed
10 years ago
1
Implement an AVX-2 query profie construction using 8-bit scores
#10
xflouris
closed
10 years ago
0
Implement an AVX-2 vectorized version of the prefix-suffix matching with 8-bit scores
#9
xflouris
closed
10 years ago
1
In the long term
#8
zhangjiajie
opened
10 years ago
1
Implement an SSE3 vectorized version of the prefix-suffix matching with scoring matrix.
#7
xflouris
closed
10 years ago
2
smith-waterman out-of-bounds approach
#6
lczech
opened
10 years ago
0
Write manuscript for optimal prefix-suffix matching given a scoring matrix (IPDPS)
#5
xflouris
opened
10 years ago
2
Implement an AVX vectorized version of the prefix-suffix matching with scoring matrix.
#4
xflouris
opened
10 years ago
0
Implement a vectorized query scoring profile for the prefix-suffix matching given a scoring matrix
#3
xflouris
closed
10 years ago
2
Implement a query scoring profile for the prefix-suffix matching with a scoring matrix
#2
xflouris
closed
10 years ago
1
Implement a non-vectorized version of the prefix-suffix matching with a scoring matrix
#1
xflouris
closed
10 years ago
2