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xgaoo / ClusterMap

ClusterMap is an R package to analyze and compare two or more single cell expression datasets.
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Is it possible to get the output files from cluster_map in a form that is modifiable ? #9

Open lucygarner opened 4 years ago

lucygarner commented 4 years ago

Hi,

I was wondering whether it is possible to get the outputs from cluster_map in a form that is customisable? e.g. so that I could change the sample names in the circos plot etc.

Best wishes, Lucy

jmrussell commented 4 years ago

What kind of data are you wanting to get out of it? If you just want to change the circos plot sample titles, you can open the circos plot function in R and change the way the titles are specified that way.

You can also change the names on your single_obj_list file as well as the clusters in your Seurat objects to what you want them to be called, the circos plot function will do the rest.

RachelLukowicz commented 3 years ago

Just wondering what the solutions were here. I am trying to make my dendrograms and heat-maps larger - I have so many clusters that the text is ineligible, and it needs to be spaced out more. Thanks!

xgaoo commented 3 years ago

We updated circos_map function to make the plot size modifiable. Thank you!