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xgrau / placozoa-cell-type-evolution-code

Code for our work on cell type evolution in placozoans (Najle, Grau-Bové et al., Cell 2023)
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cannot find the scp_plot_sc_2d function #1

Closed yigerenbenpao closed 10 months ago

yigerenbenpao commented 10 months ago

I found that you use the scp_plot_sc_2d in results_scatlas/s06_postscatlas_it0_2021-12-16.R, but cannot find the function of scp_plot_sc_2d. Could you send me the code of this function ?

xgrau commented 10 months ago

Hi yigerenbenpao, I've just added it to the scripts/helper.R script. Thanks for noticing this oversight.

Cheers,

Xavier

yigerenbenpao commented 10 months ago

Hi, Xavier, glad to receive your reply. Thank you for adding this function to script. Additionally, I also cannot find the Downstream_functions.R script. so, can you ? ᵔ◡ᵔ @xgrau

yigerenbenpao commented 10 months ago

and the Gene_module_functions.R script @xgrau

xgrau commented 10 months ago

Oh, that's unfortunate. All functions in these scripts should be in the helper.R source script though. Please let me know if something specific is missing (as it was the case with scp_plot_sc_2d).

yigerenbenpao commented 10 months ago

Thanks for you kind reply. emm... Have a little problem, such as gmod_runWGCNA function in s01_gmod_analysis_2022-08-22.R and gmod_plotMCheatmap_annotate_modules in s02_gmod_annotation_2022-08-22.R are also missing.

xgrau commented 10 months ago

Dammit, I forgot to add all gene module-related functions. Done now.

yigerenbenpao commented 10 months ago

Thank you so much, looking forward to see more fantastic project from you.