Open YasinEl opened 3 years ago
Thank you for your package! I was wondering how it is possible to get the aligned peak list from the mSet object?
mSet
I realize that it is possible to get the unaligned peak list via:
mSet@peakpicking[["chromPeaks"]]
which is in my understanding equivalent to:
xcms::chromPeaks(XCMSnExp_object)
However, what is the mSet equivalent to:
feature_defs <- xcms::featureDefinitions(XCMSnExp_object) feature_areas <- xcms::featureValues(XCMSnExp_object, value = "into") df <- merge(feature_defs, feature_areas, by=0, all=TRUE) df <- df[,!(names(df) %in% c("peakidx"))]
?
Thank you and best wishes, Yasin
Thank you for your package! I was wondering how it is possible to get the aligned peak list from the
mSet
object?I realize that it is possible to get the unaligned peak list via:
mSet@peakpicking[["chromPeaks"]]
which is in my understanding equivalent to:
xcms::chromPeaks(XCMSnExp_object)
However, what is the
mSet
equivalent to:?
Thank you and best wishes, Yasin