assertion 'ch >= 0 && ch <= 4' failed Aborted (core dumped)

YangJianshun commented 5 years ago

$ mecat2cns -i 0 -t 30 -x 1 candidatex.txt filtered.reads.fa corrected_reads.fasta

-x input_type: 0 reads candidatex.txt output filtered.reads.fa m4 corrected_reads.fasta number of threads: 15 batch size: 100000 mapping ratio: 0.4 align size: 400 cov: 6 min size: 2000 partition files: 10 tech: 1 [partition_candidates] begins. Lid = 0, Rid = 400000 candidatex.txt.part0 contains reads 5 --- 99998 candidatex.txt.part1 contains reads 100000 --- 199999 candidatex.txt.part2 contains reads 200000 --- 299998 candidatex.txt.part3 contains reads 300000 --- 380365 [partition_candidates] takes 21.66 secs. [load_fasta_db] begins. [load_fasta_db] takes 13.99 secs. [processing candidatex.txt.part0] begins. [dw, 433] assertion 'ch >= 0 && ch <= 4' failed Aborted (core dumped)

Please tell me how to solve this matter？跑nanopore数据报错

mzahm commented 5 years ago

Hi Yang,

I have the same issue. Did you solve it?

yilunhuangyue commented 5 years ago

Hello，I met the same error， Have you solve it? Thanks

natir commented 5 years ago

Hi,

Same error her, with nanopore read (fasta). Any news ?

Thanks

yilunhuangyue commented 5 years ago

No, we just use another softwares

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Hi,

Same error her, with nanopore read (fasta). Any news ?

Thanks

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xiaochuanle / MECAT

assertion 'ch >= 0 && ch <= 4' failed Aborted (core dumped) #67