search

xiaochuanle / NECAT

Nanopore data assembler
135 stars 23 forks source link

how to set the config file #17

Open shehongbing opened 4 years ago

shehongbing commented 4 years ago

hi, There are some setting I do not know how to set it, can you help me.

thanks

The setting is following: GRID_OPTIONS= SMALL_MEMORY=0 FSA_OL_FILTER_OPTIONS= FSA_ASSEMBLE_OPTIONS= FSA_CTG_BRIDGE_OPTIONS= POLISH_CONTIGS=true

asan-emirsaleh commented 2 years ago

I am agree with @shehongbing, the function of that params is unclear. @xiaochuanle can you explain this, please?