Unusual FarmCPU results

xiaolei-lab / rMVP

:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

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Unusual FarmCPU results #30

Closed strei102 closed 5 years ago

strei102 commented 5 years ago

Hi,

I ran FarmCPU for multiple traits and I got quite unusual results. I attach a few manhattan plots to illustrate the issue.

Cheers,

Stephan

rectangular-manhattan trait4 farmcpu rectangular-manhattan trait7 farmcpu rectangular-manhattan trait10 farmcpu rectangular-manhattan trait25 farmcpu rectangular-manhattan trait30 farmcpu rectangular-manhattan trait31 farmcpu

hyacz commented 5 years ago

Hi, Stephan

How many sample do you have? This seems to be due to too few samples or less stringent MAF quality control.

Cheers,

Haohao

hyacz commented 5 years ago

This issue is closed because it is no longer active.