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xiaolei-lab / rMVP

:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
Apache License 2.0
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Warning message not reflected by the output #99

Open AndModica opened 3 months ago

AndModica commented 3 months ago

Hi, I'm using rMVP to run FarmCPU on RStudio. In a exploratory run to assess the structure of the putput (2 loops with 2 permutations) i recieved this warning:

Notification messages :
 1: In as.numeric(map[, 2]) %in% c(0:max.chr) :
   NAs introduced during automatic conversion
 2: In as.numeric(map[, 2]) %in% c(0:max.chr) :
   NAs introduced during automatic conversion
 3: In max(numeric.chr, na.rm = TRUE) :
   no argument for max ; -Inf is returned

(My machine is in French, so I roughly translated the original: otherwise, I've never seen "NAs introduced during automatic conversion").

Nonetheless, neither the input contained missing data, or the output had any NA and/or infinite at all. When I run the same script by Rscript the log file didn't report anything similar. I also wasn't able to track what the warning is referring to. What could be the source of the warning? Thanks in advance for your time

YinLiLin commented 3 months ago

These warnings don't affect the results, thus just ignore it.

AndModica commented 2 months ago

Thanks!