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xiaoli-dong / metaerg

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DBD::SQLite::st execute failed: disk I/O error #19

Open aimirza opened 4 years ago

aimirza commented 4 years ago

I recieved the following error for multiple samples:

DBD::SQLite::st execute failed: disk I/O error at /Drives/K/amirza/MetaErgInstallHelper/metaerginstall/metaerg/bin/output_reports.pl line 1141

How can I prevent this problem in the future? Perhaps a database locking issue? I am running MetaErg on multiple samples in parallel. I am using metaerg.pl 1.2.0 and sqlite3 3.30.1.

Finesim97 commented 4 years ago

This line only performs a SELECT query, therefore the database is only locked against writing with a shared lock. There seems to be an different error message for locked databases in DBI. Do you have the data directory on a NFS system?