Issues potentially related to widget and nbextensions

xiaoruiDong / RDMC

Reaction Data and Molecular Conformers (RDMC) is a package dealing with reactions, molecules, conformers, majorly in 3D.

https://xiaoruidong.github.io/RDMC/

MIT License

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Issues potentially related to widget and nbextensions #8

Closed xiaoruiDong closed 4 months ago

xiaoruiDong commented 2 years ago

According to recent trials,

On MIT supercloud, the viewer can be correctly created but the notebook cannot render the javascript object correctly. A simple test is based on http://datanongrata.com/2021/01/27/simple-workaround-to-display-3d-structures-in-a-notebook/, which doesn't rely on the installation of py3Dmol
(Seems to be my personal issues?) When using VS code, the interact_XX method in the GaussianLog class cannot be launched while view_XX can.

xiaoruiDong commented 4 months ago

After some investigation, the viewer doesn't work on MIT supercloud due to MIT supercloud has no internet connection on computing nodes. Since Py3Dmol relies on javascript hosted on a specific URL, the viewer stop working of course. Implementing a workaround can be helpful but is irrelevant to this issue.

The second issue can no longer be reproduced.

Close this issue.