quesition about GO - Githubissues

xiaoyeye / CCST

Cell clustering for spatial transcriptomics data with graph neural network

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quesition about GO #2

Open yaober opened 2 years ago

yaober commented 2 years ago

Youe work is pretty impressive. Our team want to utilize your model for our task. Taking MERFISH for an instance, when we trained the model, we have no idea to design GO experiement. Could you help me with some code? Much thanks!😊

lijc0804 commented 2 years ago

You can upload the list of differentially expressed genes to the GO analysis web server (http://geneontology.org/).

yaober commented 2 years ago

UnboundLocalError: local variable 'cell_types_relabel' referenced before assignment

when we try to recurrent CCST on DLPFC, we have faced this problem, could you give me some suggestions?

lijc0804 commented 2 years ago

Thanks for your comments and we have updated data_generation_ST.py.

yaober commented 2 years ago

Thanks for your cosideration! But we have updated your new version,there are still put error:ValueError: 'c' argument has 4221 elements, which is inconsistent with 'x' and 'y' with size 4226. Could process it? My python==3.9, what is your version?