I'm very interested in using your CNNC algorithm on one of my PhD. projects - it is great! I would like to test a couple of things before doing so, and therefore I was wondering if you have some intermediate files that inform about the p-value associated to each peak for all TFs in the bone marrow-derived macrophages, dendritic cells and mESC ChIP-seqs. I guess some intermediate file like this was used to build all the gene-pairs files.
Could you provide the files with this information? Something like: TF - Gene - pvalue would be great, but a standard file containing the TF name, start and end coordinates of the peak and the p-value associated to it would also work.
Hi!
I'm very interested in using your CNNC algorithm on one of my PhD. projects - it is great! I would like to test a couple of things before doing so, and therefore I was wondering if you have some intermediate files that inform about the p-value associated to each peak for all TFs in the bone marrow-derived macrophages, dendritic cells and mESC ChIP-seqs. I guess some intermediate file like this was used to build all the gene-pairs files.
Could you provide the files with this information? Something like: TF - Gene - pvalue would be great, but a standard file containing the TF name, start and end coordinates of the peak and the p-value associated to it would also work.
Thank you very much in advance, Ines