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xiaoyeye / CNNC

covolutional neural network based coexpression analysis
MIT License
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Question about data files #9

Closed jjfeng closed 4 years ago

jjfeng commented 4 years ago

Hi!

I'm interested in training a variant of CNNC and am starting with reproducing the experiment to Predict TF–Gene Interactions. My understanding is that I have to train on the data in the files data/bone_marrow_gene_pairs_200.txt, data/dendritic_gene_pairs_200.txt, and data/mesc_gene_pairs_400.txt. However, I'm confused why the labels come from three categories instead of 2. I thought this was a binary prediction task? Are the labels actually placeholder labels?

Thanks!

jjfeng commented 4 years ago

Never mind! I see that you are providing the directionality of the interactions in the training data files, but the trained model for TF-gene interactions is actually a binary outcome.