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xiaoyeye / TFvelo

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Duplicate article results #8

Open SevenTea7 opened 7 months ago

SevenTea7 commented 7 months ago

Hi all,

Thank you for developing what looks like an exciting tool! I would like to try to repeat the last result in the article, that is, TFvelo can predict the cell fate on dataset without splicing information. But I did not find the appropriate code, please give me some guidance, thank you。 Looking forward to your kind response.

Best regards,ST

lijc0804 commented 5 months ago

Hi,

You can directly apply TFvelo to any AnnData object even when 'unspliced' and 'spliced' layers are not provided, using the code in https://github.com/xiaoyeye/TFvelo/blob/main/TFvelo_run_demo.py and https://github.com/xiaoyeye/TFvelo/blob/main/TFvelo_analysis_demo.py.

We have also uploaded a notebook which shows the application of TFvelo to preprocessed data. The preprocessing code can be found at https://github.com/xiaoyeye/TFvelo/blob/main/TFvelo_run_demo.py, and the notebook is available at https://github.com/xiaoyeye/TFvelo/blob/main/TFvelo_demo.ipynb.

Best