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Better cnv_facets
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estimate tumour purity and ploidy #2

Open h170607 opened 1 year ago

h170607 commented 1 year ago

Hi @xiasijian I now have a task to analyze tumor samples for purity and ploidy. Our data mainly comes from wgs, wes and panel sequencing. We tried absolute, ASCAT, sclust, sequenza, ichorCNA, etc., but the results were quite different. I speculate that the software may not match the data type, or the arguments are incorrect. I found your post https://github.com/ShixiangWang/DoAbsolute/issues/26. I noticed that you used different arguments from the default parameters of the software. Could you please give us some instructions on how to choose the right software and how to adjust the arguments?

best, Matt

sunyu1010 commented 1 year ago

I have the same question, looking forward to a reply(^v^) Thank you so much!