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xie186 / ViewBS

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
GNU General Public License v3.0
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problem about "OverRegion.pm" #16

Closed ChengYunazhi closed 6 years ago

ChengYunazhi commented 6 years ago

Hi,

first of all, ViewBS is a nice work, thanks for sharing this packages. I cloned today and run the example command, error was reported as below:

qq20180331-224021 2x

all testdata was download from gitlab and with no modification, how did this error happened, it seems like a format problem in region file?

Thanks

Yuanzhi

xie186 commented 6 years ago

Hi Yuanzhi, Could you please tell me which version you're using? Could you try the latest version (https://github.com/xie186/ViewBS/releases/tag/ViewBS_v0.1.4)? Thanks for using ViewBS.

ChengYunazhi commented 6 years ago

Hi Shaojun, I download and installed latest version of ViewBS (0.1.4), and error was still there:

qq20180401-105243 2x

as you can see, overregion.pm in lib of viewBS 0.1.4 was used.

Thanks!

xie186 commented 6 years ago

Could you please check it again? Sorry for the inconvenience. https://github.com/xie186/ViewBS/releases/tag/ViewBS_v0.1.4

ChengYunazhi commented 6 years ago

this time those command work well, and output expected results.

22

Thanks, Shaojun !

xie186 commented 6 years ago

Great! Please let me know if you have any questions or any suggestions. Thanks.

ChengYunazhi commented 6 years ago

Hi, Shaojun, another suggestion: png and pdf files could be printed out at the same time, png can be used in rmarkdown rendered html file, if users want to report some of WGBS results, which visulized by ViewBS.

Thanks

xie186 commented 6 years ago

Thanks for your suggestion. I'll add this feature later.