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xie186 / ViewBS

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
GNU General Public License v3.0
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how to generate a file include the methyaltion level for each gene in a group #21

Closed xiuru closed 6 years ago

xiuru commented 6 years ago

Hello Shaojun, I want to study the differences of DNA methylation patterns of 2 groups genes and got the figure successfully. The prefix_MethOverRegion_CG.txt file only include the average methylation levels of each group . Like this: sample_name region bin_num C_number T_number Methylation_level a Body 1 11748 108941 0.0973410998516849 a Body 10 34600 55444 0.384256585669228 b Body 1 22093 293248 0.0700606644870156 b Body 10 83754 139327 0.375442103989134 I am wondering how can i generate a file that include all the methylation levels of each gene in my interested group.

Thank you in advance.Looking forward to your reply. Xiuru

xie186 commented 6 years ago

Hi Xiuru, I assume you want to get the methylation levels for each gene or a specific region across multiple samples. If so, you can try subcommand MethHeatmap. Please let me know whether this helps. Best, Shaojun

xiuru commented 6 years ago

Hi Shaojun, Thanks for your help. I tried MethHeatmap and got the methylation values for each gene.

Best, Xiuru