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xie186 / ViewBS

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
GNU General Public License v3.0
81 stars 27 forks source link

Feature request: Remove Getopt::Long::Subcommand from dependencies? #42

Closed bio15anu closed 3 years ago

bio15anu commented 4 years ago

I'm mainly suggesting this because it would be really nice to have a recipe for viewbs on bioconda. I just looked into it briefly to see if I could simply add one myself, but it seems like this perl library Getopt::Long::Subcommand is the bottleneck as it has many dependencies which are seemingly also not on conda.

How difficult would it be to replace this library with a very similar one which is on conda? Seems like Getopt::Long and Getopt::Long::Descriptive are there for example, or MooseX::App also seems to support this functionality. The alternative would be to see about adding all the individual Getopt::Long::Subcommand dependencies to conda I guess.

xie186 commented 4 years ago

Thanks for the suggestion. We'll look into this and get back to you.

yykaya commented 1 year ago

Did you check the error?

I still have the problem with this issue on conda although it seems properly installed with Perl libraries, I'm facing with:

Can't locate Getopt/Long/Subcommand.pm in @INC (you may need to install the Getopt::Long::Subcommand module)

Regardless of the subject, I do not see any open issues and although it is promising for your software that all issues are closed, you have answered most of the issues such as 'I will look and back to you or we'll check xxx' etc, but there is no solution!

Best