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xie186 / ViewBS

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
GNU General Public License v3.0
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how to set the y axis scale for the profile in MethOverRegion #58

Closed Liufan-YIN closed 2 years ago

Liufan-YIN commented 3 years ago

Hello professor, When I use the function MethOverRegion for DNA methylation profile on specific group of region, I find the profile in the pdf always is shown in the top. I don't find a parameter to adjust the y axis scale. The profile has been attached. I want to know how to set the y axis scale for the profile in MethOverRegion.

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xie186 commented 2 years ago

Just in case you are still interested in this.

After you run ViewBS, a shell script is also generated. You can make a new copy of the [R code] (https://github.com/xie186/ViewBS/blob/db51b1d4061d3d12444fa979d087ce7eff569c3e/lib/Meth/OverRegion.R). You can insert the line below after this:

p = p + ylim(min, max)

Then replace the new R script with the one used in the shell script. I'll try to add parameters to enable the adjustment of y-axis scale. Thanks for using ViewBS. My apologies for the late response.