pigx bsseq - docker

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sudo docker pull bimsbbioinfo/pigx_bsseq:test

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pigx-bsseq

Install guix

#Link: https://guix.gnu.org/manual/en/html_node/Binary-Installation.html#Binary-Installation
   48  cd /tmp
   49  uname -a
   50  wget https://ftp.gnu.org/gnu/guix/guix-binary-1.0.1.x86_64-linux.tar.xz
   51  wget https://ftp.gnu.org/gnu/guix/guix-binary-1.0.1.x86_64-linux.tar.xz.sig
   52  gpg --verify guix-binary-1.0.1.x86_64-linux.tar.xz.sig

wget https://sv.gnu.org/people/viewgpg.php?user_id=15145 \
      -qO - | gpg --import -

gpg --verify guix-binary-1.0.1.x86_64-linux.tar.xz.sig
tar --warning=no-timestamp -xf guix-binary-1.0.1.x86_64-linux.tar.xz

mv var/guix /var/ && mv gnu /

ls /gnu/store/
   57  ls /var/guix
   58  ls ~root/.config/guix/
   59  mkdir -p ~root/.config/guix
   60  ln -sf /var/guix/profiles/per-user/root/current-guix          ~root/.config/guix/current
   61  GUIX_PROFILE="`echo ~root`/.config/guix/current" ;
   62  source $GUIX_PROFILE/etc/profile
   63  groupadd --system guixbuild
   64  for i in `seq -w 1 10`;   do     useradd -g guixbuild -G guixbuild                       -d /var/empty -s `which nologin`                -c "Guix build user $i" --system                guixbuilder$i;   done
   65  guix-daemon --build-users-group=guixbuild &
   66  ls
   67  ps
   68  jobs
   69  cp ~root/.config/guix/current/lib/systemd/system/guix-daemon.service      /etc/systemd/system/
   70  kill 24943
   71  systemctl start guix-daemon && systemctl enable guix-daemon
   72  systemctl
   73  apt instlal systemctl
   74  apt install systemctl
   75  systemctl
   76  sudo dpkg -l | grep systemd
   77  sudo apt-get install --reinstall systemd
   78  systemctl start guix-daemon && systemctl enable guix-daemon
   79  systemctl
   80  mkdir -p /usr/local/bin
   81  cd /usr/local/bin
   82  ln -s /var/guix/profiles/per-user/root/current-guix/bin/guix

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You need to run this before using guix install

guix-daemon --build-users-group=guixbuild

$ guix install glibc-locales
$ export GUIX_LOCPATH=$HOME/.guix-profile/lib/locale

Substitute Server Authorization:

guix archive --authorize < /root/.config/guix/current/share/guix/ci.guix.gnu.org.pub

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https://guix.gnu.org/manual/en/html_node/Binary-Installation.html

https://guix.gnu.org/manual/en/html_node/Build-Environment-Setup.html#Build-Environment-Setup

https://www.plcnext-community.net/index.php?option=com_content&view=article&id=382:install-the-gnu-guix-package-manager&catid=78&Itemid=366&lang=en

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Install Docker

To install Docker on Ubuntu, in the terminal window enter the command:

sudo apt install docker.io
 sudo service docker start
sudo service docker status

Rstudio

sudo docker pull rocker/rstudio
docker run -d --name rstudio -v $HOME:/home/`whoami` -e PASSWORD=secret -p 8787:8787 rocker/tidyverse

If it works, the command will print the ID of the new container and exit. Now you can open your browser at http://localhost:8787, enter “rstudio” as unsername, and “secret” as password.

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systemctl restart guix-daemon

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guix archive --authorize  < ./gnu/store/ncknl03pkmamrxg7q9nxi1rn1qhvwbi9-guix-1.0.1/share/guix/ci.guix.gnu.org.pub

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Error message from "guix install pigx-bsseq"

https://github.com/BIMSBbioinfo/pigx_bsseq/issues/144