Closed stanislasmorand closed 3 years ago
Hi Stan,
I don't have idea about this issue with the import of numpy. Based on the error report, it seems something wrong with your python3 environment and/or your numpy install. How did you install numpy and where is it installed on your machine?
Xie
Dear Xie, I corrected my $PYTHONPATH environment variable w/ correct export syntaxe. The test passed w/o error. Thanks again for your prompt reply. Stan
Dear Xie, I received an error message when I tried to run the test. I manually installed ISEScan and dependencies: numpy-1.19.2 scipy-1.5.2 fastcluster-1.1.26 FragGeneScan1.30 HMMER-3.3.1 BLAST 2.8.1 biopython-1.78 I also compiled the SSW library shipped with ISEScan as followed:
I updated the constants.py file with appropriate path for the different variables.
Here is the message I received when running the command :
python3 isescan.py NC_012624.fna proteome hmm --nthread 2
Do you have an idea why there is an issue with the import of numpy? Thanks in advance for your precious help & time. Kindest regards. Stan