Traceback (most recent call last):
File "/home/aswin/irsingh/miniconda3/envs/isescanner/bin/isescan.py", line 87, in <module>
isPredictSingle(args4isPredictSingle)
File "/home/aswin/irsingh/miniconda3/envs/isescanner/bin/isescan.py", line 25, in isPredictSingle
isPredict.isPredict(filelist, args['output'], args['removeShortIS'], args['translateGenome'],
File "/home/aswin/irsingh/miniconda3/envs/isescanner/bin/isPredict.py", line 208, in isPredict
proteome_files = proteinFromNCBI(dnaFiles, path_to_proteome)
File "/home/aswin/irsingh/miniconda3/envs/isescanner/bin/isPredict.py", line 195, in proteinFromNCBI
tools.gbk2fgs4protein(fnaFile, gbkFile, fgsFile)
File "/home/aswin/irsingh/miniconda3/envs/isescanner/bin/tools.py", line 1450, in gbk2fgs4protein
seqid = rdGbFna(fnaFile)
File "/home/aswin/irsingh/miniconda3/envs/isescanner/bin/tools.py", line 1298, in rdGbFna
return seqid
UnboundLocalError: local variable 'seqid' referenced before assignment
ISEScan starts at Tue Aug 23 17:43:29 2022 use NCBI protein database
command :
isescan.py --seqfile GCF_013415905.1_ASM1341590v1_genomic.gbff --output result/ --no-FragGeneScan